Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0667 ATGTCCGAATCGGCGAGTCCGACAACCCAACGGGTTCAGTCTTCTTCTTCTTCTTCTTCGATTGATACCAGAGGAAAACATAGGATTCAGGCTGAAGTGAAGCGGCTCGAGCAAGAAGCAAGGTTTCTGGAGGAAGAACTGGAACAGCTAGATAAACTGGACAAGGCATCAACAAAATGCAAAGAAATGCTGAGCAATGTGGAGACAAGACCAGACCCTCTTCTCCCACTAACCCATGGCCCCTTAAATCCGCTATGGGATCGATGGTTTGAAGACTGGGAGATTGTGATAGTTTTCTTCAACTTAGGAGGATTGCAAAAATGGAGAACTGAACCTCCAAACGGAATTTATCGTTGGGGTTTAAGCCGTTTTGGGCCGTCGATCTTCCGGCGGCAATTCCCAAGCTCTTCTCTTCTTTGGCATCTCCGTCTCTCTGCATTAATCTCCATCTCCGTTTCCGAATTCTCCCATTCCCTTTCTCCAAATTCCCGATTTCCCTTCACAATGACACAAGCTCTGCAACTTTTCACCTCTTCCGCCCGCTCTCCCGGCATTTCTCTACCCAAACACTCCCTCTCAAAACCCTCCCCTTCCTCCGCCGCGCTCCGCTTTCCCTTCTCCTTCTCCAAATCCTCAATTCGAGCCTCTTCTTCCCCGGATCTCAATCCTCTCTCATCTTCTTCCACTTCCCAAGTCTTGGTTTCTGAAAATGGCTCCAGTGCCGGAGGTGGGGTTGTGTCATCTTCTGCTACTAGGGAGTTTGTGCCTCTTGCCTCTGATTCCAGCTCGATTGAGGTTGATGCTGTCACGGAGGCTGAGTTGAAGGAGAATGGCTTCAGGAGTACCAGGAGGACTAAGCTTGTGTGCACTATTGGCCCTGCTACTTGCGGGTTTGATCAGCTCGAGGCGCTCGCTGTTGGCGGTATGAATGTCGCTAGGATCAATATGTGCCATGGGACTCGAGACTGGCATCGGACGGTCATTGAACGCGTGCGAAGGCTCAATGAAGAGAAGGGTTATGCTGTCGCTATCATGATGGATACTGAAGGGAGTGAAATTCACATGGGTGATCTCGGTGGAGCTTCTTCGGCTAAAGCGGAAGATGGTGAAATCTGGACATTCAGCGTCAGAGCTTTCGATTCAACACTCCCAGAACGCACCATTAATGTGAACTATGAAGGGTTTGCAGAAGATGTGAAAGTGGGTGATGACCTCCTTGTTGATGGTGGAATGGTGAGGTTTGAGGTAATCGAAAAAATTGGTCCTGATGTTAAGTGCCGGTGTACTGACCCGGGATTGTTGTTGCCACGGGCAAATTTGACTTTTTGGAGGGATGGACATCTAGTACGAGAACGTAATGCCATGCTCCCTACAATTTCTTCTAAGGATTGGTTGGATATTGATTTTGGGATTGCTGAAGGTGTTGATTTTATTGCCATATCATTTGTCAAGTCTGCTGAAGTAATTAAACATCTCAAAAGCTATATCGCTGCACGTTGTCGTGGCAGTGACATTTCCATCATTGCAAAAATAGAGAGTTTGGACTCGTTGAAGAACTTGGAAGAAATTATTGTAGCATCAGATGGAGCAATGGTAGCTAGAGGAGATTTAGGAGCTCAAATACCACTGGAACAAGTGCCATCAGTCCAGCAAAAGGTCGTCCAACTGTGCAGGCAATTAAATAAACCAGTTATTGTTGCTTCTCAACTGCTTGAGTCAATGATCGAATACCCTACACCCACCAGAGCTGAAGTGGCTGATGTTTCCGAGGCGGTTAGGCAGCGATCAGATGCTCTAATGCTCTCTGGGGAGTCTGCCATGGGCCAATACCCCGACAAGGCATTGGCTGTTTTGAGAAGTGTCAGTCTAAGAATTGAGAAGTGGTGGAGGGATGAGAAACGCCATGAACCTATGGAACTCCCAGAAGTTGGATCTTCATTCTCAGATAGTATCTTAGAAGAGATCTGCAATTCGGCTGCCAAAATGGCCAATAACTTGGAGGTGGATGCAATTTTCGTCTACACAACATCAGGCCACATGGCATCTCTCCTGTCCCGTTGCCGACCCGATTGCCCAATCTTTGCTTTTACTTCCACAACATCTGTGAGGAGACGTCTTAACTTGCAATGGGGATTGATACCCTTCCGGCTGAGCTTCTCCGACGATATGGAAAATAACCTCAACAAAACATTTTTGCTGCTTAAAGCCAGAAACTTGATCAAATCAGGTGACCTTGTAATTGCTGTCTCAGATATGTTGCAATCTATCCAAGTTATGAATGTTCCATAA 2289 47.01 MSESASPTTQRVQSSSSSSSIDTRGKHRIQAEVKRLEQEARFLEEELEQLDKLDKASTKCKEMLSNVETRPDPLLPLTHGPLNPLWDRWFEDWEIVIVFFNLGGLQKWRTEPPNGIYRWGLSRFGPSIFRRQFPSSSLLWHLRLSALISISVSEFSHSLSPNSRFPFTMTQALQLFTSSARSPGISLPKHSLSKPSPSSAALRFPFSFSKSSIRASSSPDLNPLSSSSTSQVLVSENGSSAGGGVVSSSATREFVPLASDSSSIEVDAVTEAELKENGFRSTRRTKLVCTIGPATCGFDQLEALAVGGMNVARINMCHGTRDWHRTVIERVRRLNEEKGYAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYEGFAEDVKVGDDLLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRANLTFWRDGHLVRERNAMLPTISSKDWLDIDFGIAEGVDFIAISFVKSAEVIKHLKSYIAARCRGSDISIIAKIESLDSLKNLEEIIVASDGAMVARGDLGAQIPLEQVPSVQQKVVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRSDALMLSGESAMGQYPDKALAVLRSVSLRIEKWWRDEKRHEPMELPEVGSSFSDSILEEICNSAAKMANNLEVDAIFVYTTSGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLQWGLIPFRLSFSDDMENNLNKTFLLLKARNLIKSGDLVIAVSDMLQSIQVMNVP 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7353653 7361225 + CcPI632755_06g006670.1 Cco06g0667 181267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0667 762 NCBIfam pyruvate kinase 283 751 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco06g0667 762 FunFam Pyruvate kinase 626 752 - -
Cco06g0667 762 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 269 629 IPR015813 GO:0003824(InterPro)
Cco06g0667 762 MobiDBLite consensus disorder prediction 1 29 - -
Cco06g0667 762 FunFam Pyruvate kinase 458 625 - -
Cco06g0667 762 FunFam Pyruvate kinase 351 457 - -
Cco06g0667 762 SUPERFAMILY PK beta-barrel domain-like 352 443 IPR011037 -
Cco06g0667 762 PANTHER PYRUVATE KINASE 258 752 IPR001697 GO:0000287(InterPro)|GO:0004743(PANTHER)|GO:0004743(InterPro)|GO:0005737(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0009570(PANTHER)|GO:0030955(InterPro)
Cco06g0667 762 Pfam Pyruvate kinase, alpha/beta domain 653 752 IPR015795 -
Cco06g0667 762 Gene3D - 283 625 IPR040442 -
Cco06g0667 762 Gene3D - 351 457 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
Cco06g0667 762 Pfam GGL domain 31 92 IPR015898 GO:0007186(InterPro)
Cco06g0667 762 ProSitePatterns Pyruvate kinase active site signature. 505 517 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Cco06g0667 762 Coils Coil 26 53 - -
Cco06g0667 762 MobiDBLite consensus disorder prediction 1 24 - -
Cco06g0667 762 Pfam Pyruvate kinase, barrel domain 283 614 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco06g0667 762 Gene3D - 626 752 IPR036918 -
Cco06g0667 762 SMART G_gamma_2 30 102 - -
Cco06g0667 762 SUPERFAMILY PK C-terminal domain-like 614 760 IPR036918 -
Cco06g0667 762 PRINTS Pyruvate kinase family signature 475 489 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco06g0667 762 PRINTS Pyruvate kinase family signature 534 558 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco06g0667 762 PRINTS Pyruvate kinase family signature 559 583 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco06g0667 762 PRINTS Pyruvate kinase family signature 340 356 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco06g0667 762 PRINTS Pyruvate kinase family signature 507 533 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco06g0667 762 PRINTS Pyruvate kinase family signature 584 602 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco06g0667 762 PRINTS Pyruvate kinase family signature 603 619 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0667 K00873 - - csv:101218017 1045.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2594 Cco-Chr2:38204725 Cco06g0667 Cco-Chr6:7353653 4.70E-63 transposed
Cco05g1022 Cco-Chr5:8985770 Cco06g0667 Cco-Chr6:7353653 2.00E-86 transposed
Cco09g1269 Cco-Chr9:13706709 Cco06g0667 Cco-Chr6:7353653 1.50E-99 transposed
Cco10g0979 Cco-Chr10:21156855 Cco06g0667 Cco-Chr6:7353653 6.10E-163 transposed
Cco11g1328 Cco-Chr11:26149286 Cco06g0667 Cco-Chr6:7353653 1.90E-59 transposed
Cco05g0558 Cco-Chr5:4498509 Cco06g0667 Cco-Chr6:7353653 3.90E-28 wgd
Cco06g0667 Cco-Chr6:7353653 Cco07g0057 Cco-Chr7:528715 1.10E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38