Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0671 | ATGGAGCCCGGTGGTCCGCCCACCCCTCCGCCGCTCCCTCCGCCGCCTACTGGTGCCACTCTCCTTGGCAAGTACCAATTGGGCCGTTTCCTCGGCCGTGGAAGTTTCGCTAAGGTGTATCAGGCCCGTTCTCTCGCCGATAATTCCATTGTCGCCGTCAAAATCATCGACAAGAACAAAACCATCGACGCCGCTATGGAGCCCTGCATTGTCCGTGAGATCGCCGTGATGCGACGCCTTCAGCACCATCCGAACATCCTCAAAATCCATGAAGTTATGGCGACGAAGACGAAGATCTACCTCGTTGTCGATTACGCCTCCGGAGGTGAACTATTCGCGAAACTCCTCCGCCGTGGTCGGCTGACGGAATCCACCGCTCGCCGCTACTTTCAACAATTAGTCTCTGCTCTCCATTTCTGTCACCAAAACGGCGTCGCTCATCGCGACATTAAACCCCAAAATCTCCTCCTCGATGAAGACGGTAACCTGAAGGTCTCCGACTTCGGTCTCTCCGCCTTACCAGAACAGATCAAAGACGGAATGCTTCACACCGCCTGTGGAACTCCGGCGTATACCGCGCCAGAGGTTGTTTCCCGGCGAGGCTACGACGGCGCAAAAGCCGATGCGTGGTCCTGTGGCGTTATCCTCTTCGTTTTACTCTCCGGCCATCTTCCATTCAGCGATAACAACCTCGTCGCTATGTACAAGAAGGTTTATCGCCGGGAATATCAATTTCCCGATTCAATTTCAAAGCCAGCGAGACATTTGATCTTCCAATTACTCGATCCAAATCCAAATACAAGGATGAGCATCGAGGCGTTAATGCAACATTCATGGTACAAGAAGTCACTGCGATCGAAGCCCCAAATTAGCAACAGGAGCTTATTTGAATCATTAGGTAATTACAAATCTGATTTGGGTGTTTCTGGATTAAATGCATTTGATATAATTTCAATGTCTTCTGGTTTGGATCTGTCTGGATTGTTTGAGACGACGGATTGTAATAAGAAGAGATTCACAACAGGAGTTAGTATGGAGAAAGTGGAAGAAAGGGTAACAGAGATTGGAGGAGAATTGGGTTATAGAGTGGAGAAAGGGAAAAGTGGGGCAATTGGGTTAGGGAAAGGGAGAATGATTTTGGTGGTGGAAGCTTTGGAAATAACTTCAAATCTGTTAATGGTGGAAGTGAAGGTAGCTGAATCCAAGATGGAGTTTGAGAGGATGCATTGGGGTGATTTGAAAGCAAAATTGCAGGATATTGTTGATTCTTGGCATACAAATGAAGCAATGTGA | 1293 | 48.41 | MEPGGPPTPPPLPPPPTGATLLGKYQLGRFLGRGSFAKVYQARSLADNSIVAVKIIDKNKTIDAAMEPCIVREIAVMRRLQHHPNILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQNGVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMYKKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMSIEALMQHSWYKKSLRSKPQISNRSLFESLGNYKSDLGVSGLNAFDIISMSSGLDLSGLFETTDCNKKRFTTGVSMEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEALEITSNLLMVEVKVAESKMEFERMHWGDLKAKLQDIVDSWHTNEAM | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7434095 | 7435387 | + | CcPI632755_06g006710.1 | Cco06g0671 | 181271 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0671 | 430 | SMART | serkin_6 | 25 | 280 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0671 | 430 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 54 | IPR017441 | GO:0005524(InterPro) | |
Cco06g0671 | 430 | Pfam | NAF domain | 311 | 365 | IPR004041 | GO:0007165(InterPro) | |
Cco06g0671 | 430 | FunFam | Non-specific serine/threonine protein kinase | 16 | 304 | - | - | |
Cco06g0671 | 430 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 20 | 401 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cco06g0671 | 430 | Pfam | Protein kinase domain | 25 | 279 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0671 | 430 | ProSiteProfiles | Protein kinase domain profile. | 25 | 280 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0671 | 430 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 145 | 157 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0671 | 430 | Gene3D | Kinase associated domain 1, KA1 | 308 | 422 | - | - | |
Cco06g0671 | 430 | FunFam | Non-specific serine/threonine protein kinase | 18 | 110 | - | - | |
Cco06g0671 | 430 | CDD | CIPK_C | 312 | 414 | - | - | |
Cco06g0671 | 430 | ProSiteProfiles | NAF domain profile. | 306 | 330 | IPR018451 | GO:0007165(InterPro) | |
Cco06g0671 | 430 | SUPERFAMILY | Protein kinase-like (PK-like) | 22 | 289 | IPR011009 | - | |
Cco06g0671 | 430 | Gene3D | Transferase(Phosphotransferase) domain 1 | 17 | 307 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0231 | Cco-Chr6:2449595 | Cco06g0671 | Cco-Chr6:7434095 | 1.60E-43 | dispersed | |
Cco06g0671 | Cco-Chr6:7434095 | Cco06g1418 | Cco-Chr6:24685348 | 2.40E-100 | dispersed | |
Cco05g0552 | Cco-Chr5:4434251 | Cco06g0671 | Cco-Chr6:7434095 | 2.90E-155 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86912 | PF00069 | Pkinase | 3.00E-73 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0671 | K12761 | - | csv:101215156 | 817.764 |