Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0671 ATGGAGCCCGGTGGTCCGCCCACCCCTCCGCCGCTCCCTCCGCCGCCTACTGGTGCCACTCTCCTTGGCAAGTACCAATTGGGCCGTTTCCTCGGCCGTGGAAGTTTCGCTAAGGTGTATCAGGCCCGTTCTCTCGCCGATAATTCCATTGTCGCCGTCAAAATCATCGACAAGAACAAAACCATCGACGCCGCTATGGAGCCCTGCATTGTCCGTGAGATCGCCGTGATGCGACGCCTTCAGCACCATCCGAACATCCTCAAAATCCATGAAGTTATGGCGACGAAGACGAAGATCTACCTCGTTGTCGATTACGCCTCCGGAGGTGAACTATTCGCGAAACTCCTCCGCCGTGGTCGGCTGACGGAATCCACCGCTCGCCGCTACTTTCAACAATTAGTCTCTGCTCTCCATTTCTGTCACCAAAACGGCGTCGCTCATCGCGACATTAAACCCCAAAATCTCCTCCTCGATGAAGACGGTAACCTGAAGGTCTCCGACTTCGGTCTCTCCGCCTTACCAGAACAGATCAAAGACGGAATGCTTCACACCGCCTGTGGAACTCCGGCGTATACCGCGCCAGAGGTTGTTTCCCGGCGAGGCTACGACGGCGCAAAAGCCGATGCGTGGTCCTGTGGCGTTATCCTCTTCGTTTTACTCTCCGGCCATCTTCCATTCAGCGATAACAACCTCGTCGCTATGTACAAGAAGGTTTATCGCCGGGAATATCAATTTCCCGATTCAATTTCAAAGCCAGCGAGACATTTGATCTTCCAATTACTCGATCCAAATCCAAATACAAGGATGAGCATCGAGGCGTTAATGCAACATTCATGGTACAAGAAGTCACTGCGATCGAAGCCCCAAATTAGCAACAGGAGCTTATTTGAATCATTAGGTAATTACAAATCTGATTTGGGTGTTTCTGGATTAAATGCATTTGATATAATTTCAATGTCTTCTGGTTTGGATCTGTCTGGATTGTTTGAGACGACGGATTGTAATAAGAAGAGATTCACAACAGGAGTTAGTATGGAGAAAGTGGAAGAAAGGGTAACAGAGATTGGAGGAGAATTGGGTTATAGAGTGGAGAAAGGGAAAAGTGGGGCAATTGGGTTAGGGAAAGGGAGAATGATTTTGGTGGTGGAAGCTTTGGAAATAACTTCAAATCTGTTAATGGTGGAAGTGAAGGTAGCTGAATCCAAGATGGAGTTTGAGAGGATGCATTGGGGTGATTTGAAAGCAAAATTGCAGGATATTGTTGATTCTTGGCATACAAATGAAGCAATGTGA 1293 48.41 MEPGGPPTPPPLPPPPTGATLLGKYQLGRFLGRGSFAKVYQARSLADNSIVAVKIIDKNKTIDAAMEPCIVREIAVMRRLQHHPNILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQNGVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMYKKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMSIEALMQHSWYKKSLRSKPQISNRSLFESLGNYKSDLGVSGLNAFDIISMSSGLDLSGLFETTDCNKKRFTTGVSMEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEALEITSNLLMVEVKVAESKMEFERMHWGDLKAKLQDIVDSWHTNEAM 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7434095 7435387 + CcPI632755_06g006710.1 Cco06g0671 181271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0671 430 SMART serkin_6 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0671 430 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Cco06g0671 430 Pfam NAF domain 311 365 IPR004041 GO:0007165(InterPro)
Cco06g0671 430 FunFam Non-specific serine/threonine protein kinase 16 304 - -
Cco06g0671 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 20 401 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco06g0671 430 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0671 430 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0671 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0671 430 Gene3D Kinase associated domain 1, KA1 308 422 - -
Cco06g0671 430 FunFam Non-specific serine/threonine protein kinase 18 110 - -
Cco06g0671 430 CDD CIPK_C 312 414 - -
Cco06g0671 430 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165(InterPro)
Cco06g0671 430 SUPERFAMILY Protein kinase-like (PK-like) 22 289 IPR011009 -
Cco06g0671 430 Gene3D Transferase(Phosphotransferase) domain 1 17 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0231 Cco-Chr6:2449595 Cco06g0671 Cco-Chr6:7434095 1.60E-43 dispersed
Cco06g0671 Cco-Chr6:7434095 Cco06g1418 Cco-Chr6:24685348 2.40E-100 dispersed
Cco05g0552 Cco-Chr5:4434251 Cco06g0671 Cco-Chr6:7434095 2.90E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86912 PF00069 Pkinase 3.00E-73 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0671 K12761 - csv:101215156 817.764