Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0673 ATGGAATCCAAAGTTGCGTTTCAGAACGATCTGAATCTCGAAGCCACCGAGCTTCGTCTTGGACTACCTGGAGTCGTTACTGAAAGAGATGATTCATCGGAGAATTCATCTGGGGTTAAACCTAATAACAAGAGGAATTTTCGCAATGATTCTGCTCCTCCCTCAAAGGCTCAGGTTGTTGGGTGGCCACCGATTAGATCTTTTAGGAAAAATACTCTTCAGGTGAATAAAACGGAGGCCACGACGGCGGCGGACGGCGGCGGAGGGATTTATGTGAAAGTGAGTATGGATGGTGCTCCTTATTTGAGGAAGATTGATTTGAGTCTCTATAAAGGCTACCCTGAACTTCTTAAAGCCTTGGAGGATATGTTCAAGTTTACCATCGGTCAATATTCTGAGAGGGAAGGTTATAAGGGATCTGATTTTGCTCCAACTTACGAAGATAAAGATGGTGATTGGATGCTTGTGGGTGATGTTCCATGGGAAATGTTTATTTCATCTTGCAAGAGGATGAGAATCATGAAAGGATCAGAAGTTGGGGGACTCAGCTGTGGCGTATGA 561 44.39 MESKVAFQNDLNLEATELRLGLPGVVTERDDSSENSSGVKPNNKRNFRNDSAPPSKAQVVGWPPIRSFRKNTLQVNKTEATTAADGGGGIYVKVSMDGAPYLRKIDLSLYKGYPELLKALEDMFKFTIGQYSEREGYKGSDFAPTYEDKDGDWMLVGDVPWEMFISSCKRMRIMKGSEVGGLSCGV 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7461515 7462377 - CcPI632755_06g006730.1 Cco06g0673 181273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0673 186 ProSiteProfiles PB1 domain profile. 89 176 IPR053793 -
Cco06g0673 186 MobiDBLite consensus disorder prediction 22 60 - -
Cco06g0673 186 Gene3D - 85 186 - -
Cco06g0673 186 FunFam Auxin-responsive protein 84 186 - -
Cco06g0673 186 Pfam AUX/IAA family 42 183 IPR033389 -
Cco06g0673 186 MobiDBLite consensus disorder prediction 29 53 - -
Cco06g0673 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 178 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
Cco06g0673 186 SUPERFAMILY CAD & PB1 domains 84 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0673 K14484 - - csv:101204324 343.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0475 Cco-Chr1:4664053 Cco06g0673 Cco-Chr6:7461515 8.20E-49 dispersed
Cco05g0548 Cco-Chr5:4375194 Cco06g0673 Cco-Chr6:7461515 8.40E-64 dispersed
Cco06g0673 Cco-Chr6:7461515 Cco08g1345 Cco-Chr8:25343826 1.70E-42 dispersed
Cco06g0673 Cco-Chr6:7461515 Cco06g0674 Cco-Chr6:7500164 2.60E-43 tandem
Cco02g1787 Cco-Chr2:30721262 Cco06g0673 Cco-Chr6:7461515 5.70E-60 wgd
Cco05g0546 Cco-Chr5:4357147 Cco06g0673 Cco-Chr6:7461515 1.80E-41 wgd
Cco06g0673 Cco-Chr6:7461515 Cco07g0064 Cco-Chr7:611745 5.70E-38 wgd
Cco06g0673 Cco-Chr6:7461515 Cco09g0723 Cco-Chr9:6561225 2.20E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g603 . . Bda03g00851 . . Bpe14g01225 Bma04g00752 Bma05g01078 Cmo08g01090 Cmo17g00188 Cma06g01345 Cma14g01773 Car06g01166 Car14g01595 . . . . . . . . . . Cla06g00624 Cam06g0663 Cec06g0666 Cco06g0673 Clacu06g0650 Cmu06g0643 Cre06g1411 . . Cone7ag0293 Cone4ag0288 . Csa02g01107 Chy05g00367 Cme06g00549 Blo02g00604 Blo07g00242 Bda11g00609 . Bpe05g00869 Bpe13g00578 Bma02g00811 Bma06g01581 Sed09g0725 Cmo06g01357 Cmo14g01809 Cma08g01114 Cma17g00191 Car08g00997 Car17g00169 . Cpe17g00171 Bhi12g02258 Tan06g2467 Cmetu05g0496 . Hepe03g0246 . Lcy13g0326 Cla05g00491 Cam05g0536 Cec05g0547 Cco05g0548 Clacu05g0533 Cmu05g0505 Cre05g0574 Lsi09g01279 Csa03g01266 Chy06g00520 Cme05g00515
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000222 1 4 4 4 3 5 8 5 5 5 5 5 10 5 5 10 5 5 8 5 5 5 5 5 6 5 5 13 10 3 169
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59477 PF02309 AUX_IAA 4.20E-59 CL0072 Cco TR