Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0676 ATGGCTCGGGACGGGCATGTAGTGCCAGTGGATCCACAGACGGTGCTGACTGTGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCTTCCACGATTTTAGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCGACAGATGAACATGTCATCCCTGTGGTTGAGGAGCTGCAGAGGCGACTGCCTCCTTCTAATGCCTTCCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGGGCCAACATGATGGTGAAGCTGAAGAAGATGACTCGCCATTTGAATTTCGTGCCCTTGAAGTTGCTTTGGAAGCCATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCCTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCTACAATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTGTTGCAACTGTACGAGGGGATGAGGATGATATTGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGAACATTGAACAAATTAACTACACTGCGAGAATATATTGATGACACAGAAGATTATATTAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTCGGAATGAACATTCCATACACTTGGAATGACGATCACGGATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGTGCGGTGTTGTTTGTCACAATTATTTACTATGCTCGCTACAAAGGCCGAGGAGATCATGGGTCAGCCCATTCAGGACCTTGGATGGAACCACTCCAATATCTATCTCCACCAAGATCTTTTGGGGTGGTTCTGGTCCGAATGATAAGGGGCTTTCTTTCCAGAAAGCACGTCGTTCAAGTCACCGAGGTTTCACTGAAGTGA 1320 44.62 MARDGHVVPVDPQTVLTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPSNAFQFQVQGDGKEYQGQHDGEAEEDDSPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNDDHGYMFKWVVIVSGVACAVLFVTIIYYARYKGRGDHGSAHSGPWMEPLQYLSPPRSFGVVLVRMIRGFLSRKHVVQVTEVSLK 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7546172 7551897 + CcPI632755_06g006760.1 Cco06g0676 181276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0676 439 Gene3D Magnesium transport protein CorA, transmembrane region 105 322 - -
Cco06g0676 439 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 328 380 IPR045863 -
Cco06g0676 439 FunFam Magnesium transporter MRS2-1 16 99 - -
Cco06g0676 439 CDD Mrs2_Mfm1p-like 28 389 IPR039204 -
Cco06g0676 439 Coils Coil 193 220 - -
Cco06g0676 439 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 13 387 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cco06g0676 439 Gene3D - 14 99 - -
Cco06g0676 439 Pfam Magnesium transporter MRS2-like 40 234 - -
Cco06g0676 439 Pfam Magnesium transporter MRS2-like 272 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0676 K16075 - - csv:101203841 696.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1114 Cco-Chr5:10098799 Cco06g0676 Cco-Chr6:7546172 2.10E-86 dispersed
Cco06g0676 Cco-Chr6:7546172 Cco10g1274 Cco-Chr10:25569569 4.40E-89 dispersed
Cco06g0676 Cco-Chr6:7546172 Cco07g0064 Cco-Chr7:611745 2.20E-144 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1274 . 1 447 MRS2 Gene Family AT1G16010 85.0 1.2e-206 716.1
Cco08g1198 . 88 462 MRS2 Gene Family AT1G16010 52.4 2.8e-107 386.0
Cco06g0676 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cco07g0064 . 796 1167 MRS2 Gene Family AT5G64560 68.4 9.0e-131 463.8
Cco02g0767 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Cco05g1114 . 59 442 MRS2 Gene Family AT3G58970 70.3 1.0e-141 500.4
Cco02g0023 . 59 442 MRS2 Gene Family AT3G58970 70.1 4.9e-141 498.0
Cco08g1198 . 88 462 MRS2 Gene Family AT2G03620 68.4 4.2e-137 485.0
Cco10g1274 . 13 447 MRS2 Gene Family AT2G03620 53.0 3.6e-112 402.1
Cco05g1114 . 59 441 MRS2 Gene Family AT4G28580 50.7 8.0e-93 337.8
Cco06g0676 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cco07g0064 . 796 1129 MRS2 Gene Family AT5G09690 63.0 1.0e-106 383.6
Cco10g1274 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Cco06g0676 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cco07g0064 . 831 1089 MRS2 Gene Family AT5G09720 60.5 2.7e-74 275.8
Cco10g1274 . 1 447 MRS2 Gene Family AT1G80900 83.0 2.1e-200 695.3
Cco08g1198 . 80 462 MRS2 Gene Family AT1G80900 53.9 4.0e-106 382.1
Cco01g1551 . 16 455 MRS2 Gene Family AT5G22830 68.6 1.5e-156 549.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58