Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0676 ATGGCTCGGGACGGGCATGTAGTGCCAGTGGATCCACAGACGGTGCTGACTGTGAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCTTCCACGATTTTAGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTGCTTAGAGATCCGACAGATGAACATGTCATCCCTGTGGTTGAGGAGCTGCAGAGGCGACTGCCTCCTTCTAATGCCTTCCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGGGCCAACATGATGGTGAAGCTGAAGAAGATGACTCGCCATTTGAATTTCGTGCCCTTGAAGTTGCTTTGGAAGCCATATGTAGTTTTCTTGCTGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGATGATGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCCTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCTACAATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTGTTGCAACTGTACGAGGGGATGAGGATGATATTGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGAACATTGAACAAATTAACTACACTGCGAGAATATATTGATGACACAGAAGATTATATTAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTCGGAATGAACATTCCATACACTTGGAATGACGATCACGGATACATGTTTAAATGGGTTGTCATTGTTTCTGGAGTAGCTTGTGCGGTGTTGTTTGTCACAATTATTTACTATGCTCGCTACAAAGGCCGAGGAGATCATGGGTCAGCCCATTCAGGACCTTGGATGGAACCACTCCAATATCTATCTCCACCAAGATCTTTTGGGGTGGTTCTGGTCCGAATGATAAGGGGCTTTCTTTCCAGAAAGCACGTCGTTCAAGTCACCGAGGTTTCACTGAAGTGA 1320 44.62 MARDGHVVPVDPQTVLTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPTDEHVIPVVEELQRRLPPSNAFQFQVQGDGKEYQGQHDGEAEEDDSPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNDDHGYMFKWVVIVSGVACAVLFVTIIYYARYKGRGDHGSAHSGPWMEPLQYLSPPRSFGVVLVRMIRGFLSRKHVVQVTEVSLK 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7546172 7551897 + CcPI632755_06g006760.1 Cco06g0676 181276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0676 439 Gene3D Magnesium transport protein CorA, transmembrane region 105 322 - -
Cco06g0676 439 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 328 380 IPR045863 -
Cco06g0676 439 FunFam Magnesium transporter MRS2-1 16 99 - -
Cco06g0676 439 CDD Mrs2_Mfm1p-like 28 389 IPR039204 -
Cco06g0676 439 Coils Coil 193 220 - -
Cco06g0676 439 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 13 387 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cco06g0676 439 Gene3D - 14 99 - -
Cco06g0676 439 Pfam Magnesium transporter MRS2-like 40 234 - -
Cco06g0676 439 Pfam Magnesium transporter MRS2-like 272 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1114 Cco-Chr5:10098799 Cco06g0676 Cco-Chr6:7546172 2.10E-86 dispersed
Cco06g0676 Cco-Chr6:7546172 Cco10g1274 Cco-Chr10:25569569 4.40E-89 dispersed
Cco06g0676 Cco-Chr6:7546172 Cco07g0064 Cco-Chr7:611745 2.20E-144 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0676 K16075 - csv:101203841 696.812