Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0690 ATGGATCATACTTTTCCTGCGGAATTCTGGCATAACGATTTCTTTTGGCTCGACGCTCCCATTTCCGTCCCCGCCGCCGGTCCTGCGAGACAGATAAGTGCTTTCGTACCATATGATCCGTCTCAACTGGCTACCGGATTGGGACAAGAAAACAATCCGACAACTACCACCGTCACCACGAGCTATAATTCTAGGAATGTGAACAAGAGGATGGTTGAGTATTGGAGGAAGCATTGGCATGAAAAGAAAGAACCAACTCCCCTAGGGGAATTAGAGAGAGAAAAATGTCACCGGCACATGTTGAACGAGAGGATGAGAAGAGAGAAACAGAAACAGAGTTATTTGGCACTCCACTCCATGCTCCCCAAAAATACTAAGAACGATAAGAATTCCATCGTTCAAAGTGCGGCGAGAGCAATACAAGAAATGAAAGCCTTAGAGGAGATTTTAAAGAGGAGAAACTTAGAATTGGAGATGGCAATAGCAAGGAAGAAGAAAGAAAAGGAAAAGGAGACAACACCAATAATAAGTGTAGCATTGTCCAATCCTTCTTGTGGGATCAACTCAATGCTGGCTGTTCTCAATGTTCTCAAGACTGTTGGAGTAAATTCCAAAGCCATTCATGCCACTTTCGTCAACTCTCAGTTTTCAGCCCAATTAGCCATTGATACCCATATGGGAGCTGCCGAAGTAGAAAGAGCATTGCAGGTGACGCTAAACGAAGCTGAGAGGAAATTTCAAAGGCAATGCATGGAAGGGTCCAAACAAATAAAAGAGAGCCATTTTAATTTTAATAATAATAAAGGGGCCCACGAGGTGGGTCCAGAATTTCAATTTTAA 840 43.21 MDHTFPAEFWHNDFFWLDAPISVPAAGPARQISAFVPYDPSQLATGLGQENNPTTTTVTTSYNSRNVNKRMVEYWRKHWHEKKEPTPLGELEREKCHRHMLNERMRREKQKQSYLALHSMLPKNTKNDKNSIVQSAARAIQEMKALEEILKRRNLELEMAIARKKKEKEKETTPIISVALSNPSCGINSMLAVLNVLKTVGVNSKAIHATFVNSQFSAQLAIDTHMGAAEVERALQVTLNEAERKFQRQCMEGSKQIKESHFNFNNNKGAHEVGPEFQF 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7729511 7730667 + CcPI632755_06g006900.1 Cco06g0690 181290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0690 279 Pfam Helix-loop-helix DNA-binding domain 97 143 IPR011598 GO:0046983(InterPro)
Cco06g0690 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 154 IPR036638 GO:0046983(InterPro)
Cco06g0690 279 SMART finulus 100 149 IPR011598 GO:0046983(InterPro)
Cco06g0690 279 Gene3D - 89 161 IPR036638 GO:0046983(InterPro)
Cco06g0690 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 143 IPR011598 GO:0046983(InterPro)
Cco06g0690 279 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 30 244 IPR044658 -
Cco06g0690 279 Coils Coil 136 172 - -
Cco06g0690 279 CDD bHLH_AtbHLH_like 99 151 IPR045239 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0690 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g612 . . . . . . . . Cmo08g01078 Cmo17g00176 . . . . . . . . . . . . . . Cla06g00637 Cam06g0681 Cec06g0684 Cco06g0690 Clacu06g0667 Cmu06g0659 Cre06g1427 . . . Cone4ag0295 . Csa02g01090 Chy05g00351 . . . . . . . . Bma06g01583 . . . Cma08g01106 Cma17g00179 Car08g00979 Car17g00161 Cpe12g00155 . . . . . . . . . . . . . . . Lsi09g01263 . . Cme05g00532
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008643 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59479 PF00010 HLH 1.10E-06 No_clan Cco TF