Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0696 ATGACGTCTTTCTCCCTCCATACACTCACACTCCACCGCTACATCATGGCTTTCAATCGACTTCACATCCTCCTCCACTTCACGGCGGTTCTGCTTCTTCTCTACTACCGGACCACCGCCCTCCACCGACGCAACCACCACCTCCTCTGGTCTCTCCTCACCCTCGCGGAACTCTTATTCGCCTTCGTTTGGCTCCTAACCCAGTCCTTCCGATGGCGCCCGGTCTCCCGCTCCGTGTCGCCGGAGAATCTTCCCGGAGAGGGGGAGCTTCCCGGCGTGGACGTGTTTATCTGCACGGCGGATCCGGCAAAAGAGCCGACGGTAGAGGTAATGAACACGGTGTTGTCGTGTCTAGCTCTGGATTACCCGGCGGAGAAGCTGGCGGTGTATCTTTCGGACGACGGTGGGTCTCCGGTGACGGATTATGGTGTGAAAAAAGCTGGATGGTTGGCAAAGGCTTGGGTTCCGTTTTGTAGAGAATACGGAATTAATTCAAGATGTCCAGAAATTTATTTCTCTTCGCTGGCAGACGAAGACCGGATTTTTCGAGAAGACAAATTCGTAGAAGAGGAAAACAAAATTAAGAAGCAATACGAAGCGATGAAGAGGGATTTGGAAAGATTTGAAATGGAGAGAGATCATAAGAGTGGTGTCATTAAGGACCGATCTGCTCGTGTGGAGACCATTCTCGATGGAGAAAACGACGGAGAAGGATTCCGGCTGCCACTGCTCGTTTATGTCTCTCGAGAGCGAAGACCATCGGTTCCTCACCGGTACAAAGCCGGCAACATCAACAGTCTCGTTCGCGTCTCCGGATTGATCAGCAATAACCCTTATTTTTTGGTCTTAGACTGCGACATGCACTGCAATGACCCAACATCAGTTAAGCAAGCTATGTGCTTCTATCTTGATTCCACCTTTTCCAGCTCTCTGGGATTTGTTCAATTCCCCCAAATTTTCTACAATCTTAGTAAGAATGATATCTATGACAACCAAGCTAGACCTGCTTTCAAGACTAAGTGGATTGGAATGGATGGGCTAAGAGGGCCAGTGATGTCCGGAACTGGATATTTCTTGAGGAGGAAAGCGTTGTATGGGAGTCCTAATCAGGAAGAGGGGTTTGATGTGGAGCCACATAAAGTTTTTGGTCAATCTCAGAAGTTTATTGACTCATTGAAGATGGAAAAAGAATATCCAATGGATGAGATGTTAAATGAAGCTGTAACTTTGGCCTCATGTTCTTATGAGGAAAACACTGAATGGGGCAAAAAGATTGGGTTCTCGTATGACTGTTTGCTGGAGAGCACCTTCACTGGGTATCTGCTGCAATGCAAAGGATGGACTTCTGCTTATCTATACCCAAAGCGACCATGCTTCCTCGGTTGCAGCCCCGTCGACATGAAAGACGCCATGGTTCAGATGCTAAAATGGAGCTCTGAGTTATTCCAAGTTGGTTTCTCTAAGTATAGTCCTCTCATATACGGCATCTCGAGGATGTCCATTCTCCAAAGCATGTCCTACGCGTATTTTGCATTCTCTTCTCTGCTTTCAGTTGCTTTCGTCTTGTATGGGGTGGTTCCTCAGTGGGGCTTCTTGAAAGGCATCCCCTTGTATCCAAAGCTTTCAGATCCATGGTTTGCTGTGTTTGTTGCCATATTCATTTCTTCCATTGTGCAACACCTGATCGAGGTGTTCTCAAGCGGTGGAAACTTGAAGACATGGTGGAACGAGCTGAGAATCTGGATGGTGAAGTCAGTTTCTGCTTGCTTATTCGGGGTGGCAGATGCCATGATGAAGATAACAGGAATGAAGAAGACAGAGTTGAACCTTACAAACAAGGCAATAGACAAAGAGAAGCTCGAAAAATACGAAAAGGGAATGTTTGATTTGCAAGGAGCTGCAGTGCTAATGGCTCCTCTGTTTGTCATAGGTCTATGGAATATGATTTGCTTTGTCGGTGGGATGAGGAAGGTGGTGAAGAACAGGAATTTTGAGGAGATGTTTGGGCAGATGTTTCTGCTATCCTTTGCTCTGGTTCTGCATTACCCTGTTCTTGTAGGGGTAATAAAAAGATCGAACACGATGAAGTAA 2091 46.96 MTSFSLHTLTLHRYIMAFNRLHILLHFTAVLLLLYYRTTALHRRNHHLLWSLLTLAELLFAFVWLLTQSFRWRPVSRSVSPENLPGEGELPGVDVFICTADPAKEPTVEVMNTVLSCLALDYPAEKLAVYLSDDGGSPVTDYGVKKAGWLAKAWVPFCREYGINSRCPEIYFSSLADEDRIFREDKFVEEENKIKKQYEAMKRDLERFEMERDHKSGVIKDRSARVETILDGENDGEGFRLPLLVYVSRERRPSVPHRYKAGNINSLVRVSGLISNNPYFLVLDCDMHCNDPTSVKQAMCFYLDSTFSSSLGFVQFPQIFYNLSKNDIYDNQARPAFKTKWIGMDGLRGPVMSGTGYFLRRKALYGSPNQEEGFDVEPHKVFGQSQKFIDSLKMEKEYPMDEMLNEAVTLASCSYEENTEWGKKIGFSYDCLLESTFTGYLLQCKGWTSAYLYPKRPCFLGCSPVDMKDAMVQMLKWSSELFQVGFSKYSPLIYGISRMSILQSMSYAYFAFSSLLSVAFVLYGVVPQWGFLKGIPLYPKLSDPWFAVFVAIFISSIVQHLIEVFSSGGNLKTWWNELRIWMVKSVSACLFGVADAMMKITGMKKTELNLTNKAIDKEKLEKYEKGMFDLQGAAVLMAPLFVIGLWNMICFVGGMRKVVKNRNFEEMFGQMFLLSFALVLHYPVLVGVIKRSNTMK 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7785848 7792446 + CcPI632755_06g006960.1 Cco06g0696 181296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0696 696 SUPERFAMILY Nucleotide-diphospho-sugar transferases 93 520 IPR029044 -
Cco06g0696 696 Pfam Cellulose synthase 93 367 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cco06g0696 696 Pfam Cellulose synthase 379 694 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cco06g0696 696 Coils Coil 191 211 - -
Cco06g0696 696 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 18 693 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cco06g0696 696 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 214 376 IPR029044 -
Cco06g0696 696 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 81 169 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0696 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0696 Cco-Chr6:7785848 Cco07g1218 Cco-Chr7:26040274 5.10E-124 dispersed
Cco06g0696 Cco-Chr6:7785848 Cco02g0984 Cco-Chr2:12193491 1.50E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g637 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00642 Cam06g0687 Cec06g0689 Cco06g0696 Clacu06g0673 Cmu06g0664 Cre06g1432 . . . . Lsi05g01692 . . . . . . . . . . . . . . . . . . . . Bhi12g01651 . . Lac12g2203 . . Lcy13g0346 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007282 0 2 0 0 0 1 0 1 1 1 1 1 2 1 1 0 1 2 0 1 1 2 1 2 2 3 3 2 0 4 36