Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0700 ATGGTTGCAGAGCCTTGGATTGTGAAAATGGGGAACCAGGTTAGTGCTAATCTCAAACACGCCCTCCTCGAATCTTCTAAGAACAAGAACTCTAGAAAACCAGAAATCGGTGGCAATACTAAGCAAACAATCGGTATTCTCTCTTTTGAAGTTGCTAATGTAATGTCCAAAACGATTTACCTTCATAAATCCCTGTCTCATTCTGCCATTTCGAAGCTCAAGAACGAGATCTTGAGCTCCGATGGAGTTAAAAACCTTATCTCCTCTGATGAGGTTCATCTTCTCGAGCTTGTGGTTGCTGAGAAGCTTGAGGATTTAAACCGAGTGGCTAATGTGGTTTCTAGGCTTGGGAAGAAGTGTTCTCAACCTGCGTTACAAGGGTTTCAACATGTGTACTTGGATATCATTAATGGAGTTATAAATGTGAAGGAATTGGGGTTTCTAGTGAAGGATATGGAGGGGATGATGAAAAAAATGGAGAGGTATGTGAATGCTACGGCAAATTTGTACACTGAAATGGAGGTTTTGAATGAATTGGAACAGGCTGCAAAGAAGTTTCAGAACAATCAGCATGAAGAGAGCAGAAAGGCGTATGAACAGAAACTTATATGGCAGAAACAAGATGTGGGGCATCTCAAGGATATTTCTCTTTGGAACCAAACGTATGATAAGGTTGTTGAACTGCTGGCGAGAACTGTTTGTACAGTTTATGCGAGGATTCATTTAGTATTTGGGGACCCTTTTCTGAAGAAGGATGTGAATGAGAATGGTTCAAGTAATGATGTGAATCATCATGTTCAAAATGGTGTAGAGTTGATGGAATCGAAACGTGCGTCTGCCGAGAGAGGCCCCGGACCAAGATGGGGGTCGAGTATTAAGTCTCAAATTAGCTCAAGAAGAGGTGAGGTTTCATTGGTTACACCTGATGACTTCAATTTCCCTTGTGGAACAAATCCTGGGAGGCTTCTCATGGATTGCCTTAGTTTAAGTAGTTCAGTTTCCAAGTTGTATGATGAGGATGATGACAGTTATGTTGACCGTGACAATCGAAGCTGCCAAACCTCCGGTCGTAGCATTAGGAACAGTGGTTCCAGCCAATTTAGTTCTTTCAGTCAGGTACAGTTCTCTATTCCATTTGGGGTGGATCAAAGACAAGCAAAAAGTGTGATGTCTAACAGTGGAGGAAACTTTGGCCTCAAGAGTAGGTTATCTATCTACGCACTGGTTTCAACCATCGGAGGCTCTGCTCTTGCTTTGCATTATGCAAATATCATCATTGTCATTGAAAAGTTACTTCGTTATCCTCATTTAGTTGGTGACGAAGCTCGAGACGATTTGTATCAGATGCTACCAACAAGTTTAAGATCATCCCTGAAAACACATTTGAAATCTTATGTTAAGAACCTGGCCATATATGATGCTCCTCTTGCCCATGATTGGAAGGAGACTCTCGATGGGATCTTGAGCTGGCTCGCTCCGTTGGCACACAACATGATTCGGTGGCAAAGCGAGCGTAATTTCGAACAACATCAGATTGTGACTCGAACTAACGTATTGCTGATCCAAACTTTGTATTTTGCTGATCGCAAGAAGACTGAGGAAGCCATATGTGAGCTTCTTGTTGGATTGAATTACATTTGCCGCTACGAGCATCAGCAAAATGCATTGCTGGATTGTGCAAGTAGTTTCGACTTTGAAGATTGTATGGAGTGGCAGTTGCAATGTAAAGCTTCCTTGAGCACACTGAAAGACATGATTGATGGGGACTTCAATTCGTCACTGTTTGCTGTTGAGAGGGAGCACCGTTCTTCTAGATCTGCTCTCTTTGATGACCTTGAGGAGGGTGGTCTCAGGACTAGCTCTTCCGTTGAAATTAAAGAGCATGACAATGACAAAGCCCTCCATACTTTGGAAGATAGAGTTTCTATTCTCAAGAGGTTTTCATTTCCAGCAAAAAGGAAGTCTGATCCCCCTCCCGGGATTTGTCTTCTTGATCCAGCAGCTCTTGATGGAAATGGCATGGATGCTTCAAGGGGTATAATGTCAAGAACCATGGATCGATTCAAGATGGTTTTCGAGCAAAAATCAAAGTGGAGAACTTGTAGACTTGCGTTGTATTTTGTGTTGACCTTTCTACTACTTTTCTATCTCATCAGTCGGTTGGGCTTTCCGGCCACCGGCCCAATATCAACCACCGTTGACGGCAGTGGAAGAGATCATGACGACGATGAAGACGAGCCAAACGGAGGCCGCGTGGTGGTCGGAAACCGCCGATCGAGAGGACGGCCACCGGGATCGAAAAACAAACCAAAATCTCCAATCATCGTCACGCGTGACAACCCTCACGCACTTCGCACGCACGTGATCGAGATCGTCGGAGGAGCCGACGTCGCCGGCAGCATAAAGCAATTCTCCTGCCGCCGACAACGTGGGGTTTGTGTTCTCAGTGGCAGCGGTACGGTTGTGGACGTAACTCTCCGGCAATCCGCCGGTTCTGCCGCCGTGATCCAACTTCACGGCCGGTTCGATATTCTATCTCTGAGTGGGTCTTTTCTTCCCGGTCGAGCCCCTCCCTGTTCGACCGGGCTGACCGTGTACTTGTCGGGCGGTGAGGGGCAGGTGATTGGAGGGACGGTGGTGGGCCCATTGTTGGCGGCTGGGCCTATAATTTTGATAGCTGCTACTTTTGCTAGTGCTACTTATGAGAGATTGCCTTTACAAGACGACCATAATAATCAAGAAAGAGAGATTTCTCCGGCCACCACGGGCGGCGGAGAAGTGGAGTTGCCGCCGCAGTTTACTCGGATGGCAACTTCAATTTACGACTTGATGTCACGAAATAATCATGATGGAGTTGATGGGTATGGTTGGGCTCATGAGAGACCATCTTTTGTTTAA 2898 45.58 MVAEPWIVKMGNQVSANLKHALLESSKNKNSRKPEIGGNTKQTIGILSFEVANVMSKTIYLHKSLSHSAISKLKNEILSSDGVKNLISSDEVHLLELVVAEKLEDLNRVANVVSRLGKKCSQPALQGFQHVYLDIINGVINVKELGFLVKDMEGMMKKMERYVNATANLYTEMEVLNELEQAAKKFQNNQHEESRKAYEQKLIWQKQDVGHLKDISLWNQTYDKVVELLARTVCTVYARIHLVFGDPFLKKDVNENGSSNDVNHHVQNGVELMESKRASAERGPGPRWGSSIKSQISSRRGEVSLVTPDDFNFPCGTNPGRLLMDCLSLSSSVSKLYDEDDDSYVDRDNRSCQTSGRSIRNSGSSQFSSFSQVQFSIPFGVDQRQAKSVMSNSGGNFGLKSRLSIYALVSTIGGSALALHYANIIIVIEKLLRYPHLVGDEARDDLYQMLPTSLRSSLKTHLKSYVKNLAIYDAPLAHDWKETLDGILSWLAPLAHNMIRWQSERNFEQHQIVTRTNVLLIQTLYFADRKKTEEAICELLVGLNYICRYEHQQNALLDCASSFDFEDCMEWQLQCKASLSTLKDMIDGDFNSSLFAVEREHRSSRSALFDDLEEGGLRTSSSVEIKEHDNDKALHTLEDRVSILKRFSFPAKRKSDPPPGICLLDPAALDGNGMDASRGIMSRTMDRFKMVFEQKSKWRTCRLALYFVLTFLLLFYLISRLGFPATGPISTTVDGSGRDHDDDEDEPNGGRVVVGNRRSRGRPPGSKNKPKSPIIVTRDNPHALRTHVIEIVGGADVAGSIKQFSCRRQRGVCVLSGSGTVVDVTLRQSAGSAAVIQLHGRFDILSLSGSFLPGRAPPCSTGLTVYLSGGEGQVIGGTVVGPLLAAGPIILIAATFASATYERLPLQDDHNNQEREISPATTGGGEVELPPQFTRMATSIYDLMSRNNHDGVDGYGWAHERPSFV 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7843527 7857722 - CcPI632755_06g007000.1 Cco06g0700 181300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0700 965 Pfam Protein of unknown function (DUF668) 411 500 IPR007700 GO:0045927(InterPro)
Cco06g0700 965 MobiDBLite consensus disorder prediction 907 929 - -
Cco06g0700 965 Pfam Plants and Prokaryotes Conserved (PCC) domain 785 896 IPR005175 -
Cco06g0700 965 Gene3D - 784 914 - -
Cco06g0700 965 MobiDBLite consensus disorder prediction 735 751 - -
Cco06g0700 965 MobiDBLite consensus disorder prediction 729 776 - -
Cco06g0700 965 PANTHER BNAC09G50660D PROTEIN 1 563 - -
Cco06g0700 965 Pfam Domain of unknown function (DUF3475) 46 102 IPR021864 GO:0045927(InterPro)
Cco06g0700 965 Coils Coil 176 196 - -
Cco06g0700 965 CDD DUF296 785 896 IPR005175 -
Cco06g0700 965 ProSiteProfiles PPC domain profile profile. 781 920 IPR005175 -
Cco06g0700 965 SUPERFAMILY AF0104/ALDC/Ptd012-like 782 909 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0700 Cco-Chr6:7843527 Cco07g0348 Cco-Chr7:3666747 8.60E-53 dispersed
Cco04g0988 Cco-Chr4:25489476 Cco06g0700 Cco-Chr6:7843527 1.80E-62 transposed
Cco05g0903 Cco-Chr5:7804036 Cco06g0700 Cco-Chr6:7843527 4.20E-69 transposed
Cco08g0946 Cco-Chr8:21347097 Cco06g0700 Cco-Chr6:7843527 1.90E-87 transposed
Cco08g1607 Cco-Chr8:27618829 Cco06g0700 Cco-Chr6:7843527 2.50E-18 transposed
Cco09g1037 Cco-Chr9:9946208 Cco06g0700 Cco-Chr6:7843527 1.10E-23 transposed
Cco10g1933 Cco-Chr10:32910955 Cco06g0700 Cco-Chr6:7843527 2.60E-62 transposed
Cco02g1816 Cco-Chr2:31046943 Cco06g0700 Cco-Chr6:7843527 4.00E-62 wgd
Cco05g0522 Cco-Chr5:4163597 Cco06g0700 Cco-Chr6:7843527 6.00E-60 wgd
Cco06g0700 Cco-Chr6:7843527 Cco07g0091 Cco-Chr7:912354 4.00E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0700 - - - 0.0