Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0709 ATGAACAGCCATTTACAAGTTTTCAATTCTTACGATCGCCAAGCAGAGCTCAAAGCTTTCCACAACACCAAATTGGGAGTGAAGGGTGTGGCCGATTCCGGCGTTACCAAAATCCCAAAAATCTTCAGCCACGTCAATCAATCCCCCTCCCTCATCACCTCCCCTGCAGTTGCAGCGGCGGAGAAATTAGCAGGCGAAACAGAGGCCAAGAATTTAACAATCCCTATTATCGATCTCGAACAAACCCAGAAAAACAGAGCAAAAGTAATCAACGAAATCAGAGAAGCCAGCGAAAATTGGGGATTTTTTCAAATCCTCAACCATGGGGTTCCGTTAGCCGTTATGGACGAGATGATGAACGGAATCCGGCGGTTTCACGAGCAGGACGACGAGATGAAGAAGGATTTGTATTCGAGAGATTTTCAGAGGAAGGTTCTTTTTAATACTAATTTCGATTTGTTCAAAGGGGTTTCGACGAATTGGAGGGACACGTTGACGGTGGTGGTAGCGCCGCGTGGGGCGGAGGCGGAGGATTTACCGGTGGTTTCTAGGGAGGCTGTGATGGATTACTCGAAAAGGGTGATGGAATTGGGGGGAGTTTTGCTGAAATTGTTGTCGGAGGGATTAGGGCTGGCGCCAAATCGGCTGAAGGAGTTGGGTTGTGGAGAGGGAATGGTAATGTTTTGCCATTATTATCCGCCGTGTCCTCAGCCGGAACTCACTTGGGGAACCACCGATCATACGGATAGTAGTTTTCTGACGGTGCTGTTGCAGGATGACTTCGGCGGCCTTCAAGTCCGCCATGGAGATCGATGGGTGGATGTTCATCCCATTAAAGGAGCTTTTGTTGTAAACATTGGCGATTTCATGCAGATAATGTCCAATGATAAGTTCAAAAGTGTGAATCATAGGGTTTTAGCAAATAAGGGAGGGCCAAGAATTTCAGTGGCAAGTTTTTTTAGGTGCAATCTTCCACCAGAAAATGGTTTAGTTTTTGGACCAATTAAGGAGTTAAGTTCAGAGGAAAATCCAGACGTTTATAGAGAAACATCCATCAAAGACTATGTGGCTCACTACTATAAAAAAGGCCTCAATGGCATCTCTGCCCTTGAACACTTCAAACTTTGA 1128 45.92 MNSHLQVFNSYDRQAELKAFHNTKLGVKGVADSGVTKIPKIFSHVNQSPSLITSPAVAAAEKLAGETEAKNLTIPIIDLEQTQKNRAKVINEIREASENWGFFQILNHGVPLAVMDEMMNGIRRFHEQDDEMKKDLYSRDFQRKVLFNTNFDLFKGVSTNWRDTLTVVVAPRGAEAEDLPVVSREAVMDYSKRVMELGGVLLKLLSEGLGLAPNRLKELGCGEGMVMFCHYYPPCPQPELTWGTTDHTDSSFLTVLLQDDFGGLQVRHGDRWVDVHPIKGAFVVNIGDFMQIMSNDKFKSVNHRVLANKGGPRISVASFFRCNLPPENGLVFGPIKELSSEENPDVYRETSIKDYVAHYYKKGLNGISALEHFKL 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7935239 7938347 + CcPI632755_06g007090.1 Cco06g0709 181309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0709 375 SUPERFAMILY Clavaminate synthase-like 24 365 - -
Cco06g0709 375 Pfam non-haem dioxygenase in morphine synthesis N-terminal 74 170 IPR026992 -
Cco06g0709 375 Coils Coil 79 99 - -
Cco06g0709 375 Gene3D - 17 358 IPR027443 -
Cco06g0709 375 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 223 324 IPR005123 -
Cco06g0709 375 FunFam 1-aminocyclopropane-1-carboxylate oxidase homolog 1 17 358 - -
Cco06g0709 375 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 23 361 - -
Cco06g0709 375 Pfam 2OG-Fe(II) oxygenase superfamily 225 321 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0709 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0512 Cco-Chr5:4101979 Cco06g0709 Cco-Chr6:7935239 5.10E-24 dispersed
Cco05g0513 Cco-Chr5:4105857 Cco06g0709 Cco-Chr6:7935239 9.60E-109 dispersed
Cco06g0709 Cco-Chr6:7935239 Cco09g0746 Cco-Chr9:6835602 9.90E-82 dispersed
Cco06g0709 Cco-Chr6:7935239 Cco06g0710 Cco-Chr6:7955910 4.20E-17 tandem
Cco07g0615 Cco-Chr7:9322918 Cco06g0709 Cco-Chr6:7935239 9.20E-86 transposed
Cco05g0506 Cco-Chr5:4066621 Cco06g0709 Cco-Chr6:7935239 1.20E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g654 . . . . . . . . . . . . . . . Cpe08g00326 . . . . . . . . Cla06g00651 Cam06g0697 Cec06g0700 Cco06g0709 Clacu06g0683 Cmu06g0674 Cre06g1443 . . . . . . . . . Blo07g00254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g01229 . Cme05g00550
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000120 1 1 3 2 2 1 5 9 8 1 3 7 6 4 12 8 7 4 4 8 9 14 11 13 12 12 11 13 13 18 222