Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0716 ATGAATTCTTCATTCTTTCACTCCCAAAACGCCGATCTCTCGCCGGAATCTTCCTTTGGCTCCTTCGAATCCCTCCGATGGGAAGGTTTTCAAATAAACGACAACTCTCTGCCCTTCAACGAGAATGATTCCGGAGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGTGTACCCGCCGGAGAATTCCCCCCGGCAGGCTCCGATCAAAGACGAGGAGGTTGATTCGCTTGGAGAAGAAGACCCCCACAAGAGAAAGTCATACAGAGGAGTCCGCCGGCGACCGTGGGGAAAATTCGCGGCGGAGATACGAGACTCGACCCGACATGGGGTTCGGGTTTGGCTCGGGACATTCGACAGCGCCGAGGCGGCTGCTTTGGCCTACGATCAAGCTGCTTTTTCAATGAGAGGCCCTGCTGCCGTTCTCAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTCAAGGAGATGGAGATGATCAACTCCGCCGCATACGGAGGCGATGGCGAGGGAGACAGCGGATCTCCGGTGGTGGCTCTGAAGAGAAAACACTCTATGAGGAAGAAATTCACGAGAAGAAAGAGCAAAGAGAGAGATGGGATTGAGAAGATTGAGAATAATGTGGTAGTTTTGGAAGATCTTGGCTCTGATTATTTGGAAGAACTTCTAAAGTCGTCGGAGAATCTCCGACCGTGGTGA 699 51.93 MNSSFFHSQNADLSPESSFGSFESLRWEGFQINDNSLPFNENDSGEMLLHSLISEAAVYPPENSPRQAPIKDEEVDSLGEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGPAAVLNFPVERVQESLKEMEMINSAAYGGDGEGDSGSPVVALKRKHSMRKKFTRRKSKERDGIEKIENNVVVLEDLGSDYLEELLKSSENLRPW 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8060725 8061423 + CcPI632755_06g007160.1 Cco06g0716 181316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0716 232 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g0716 232 CDD AP2 87 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g0716 232 MobiDBLite consensus disorder prediction 67 87 - -
Cco06g0716 232 SMART rav1_2 88 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g0716 232 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Cco06g0716 232 MobiDBLite consensus disorder prediction 60 91 - -
Cco06g0716 232 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677(InterPro)
Cco06g0716 232 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g0716 232 PANTHER DNA-BINDING DOMAIN 57 188 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cco06g0716 232 Pfam AP2 domain 88 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g0716 232 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g0716 232 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2127 Cco-Chr4:35118260 Cco06g0716 Cco-Chr6:8060725 1.80E-27 dispersed
Cco04g2128 Cco-Chr4:35119124 Cco06g0716 Cco-Chr6:8060725 8.20E-25 dispersed
Cco05g0500 Cco-Chr5:4003503 Cco06g0716 Cco-Chr6:8060725 7.10E-67 dispersed
Cco06g0716 Cco-Chr6:8060725 Cco07g0101 Cco-Chr7:1034172 4.00E-41 dispersed
Cco06g0714 Cco-Chr6:8002516 Cco06g0716 Cco-Chr6:8060725 6.60E-22 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59482 PF00847 AP2 6.00E-15 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0716 K14516 - csv:101206564 403.675