Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0725 ATGAGCCAACAAGTGGGAGTGCTAAATGCACTCGACATTGCAAAAACCCAATGGTACCATTTCACTGCAATCATCATCGCCGGAATGGGTTTCTTCACCGACGCCTACGATCTCTTCTGCATCTCCATCGTCACTAAACTCCTCGGCCGTATCTATTACCATATTCCAAATTCTCCCAGACCCGGCTCCCTCCCCCCCAACATCGCCGCCGCCGTCAACGGCGTCGCCTTCTGCGGCACCCTCAGCGGCCAACTCTTCTTCGGCTGGCTCGGTGACAAGCTCGGCCGCAAGAAAGTCTACGGCATTACCCTCATTCTCATGGTCGTCTGTTCCATCGCCTCCGGCCTCTCCTTCGGCAACTCCCCAAAAGCCGTCATCGCCACCCTCTGTTTCTTCCGTTTCTGGCTCGGCTTCGGAATCGGCGGCGACTACCCTCTCTCCGCCACCATCATGTCCGAATACGCCAACAAAAAAACCCGCGGCGCCTTCATCGCCGCGGTCTTTGCAATGCAAGGCTTCGGAATTTTAGGGGGAGGAATCGTCGCTTTAATCGTCTCTTCCGCTTTCAACAACCGCTTCCCAGCACCACCGTACATGGACAATCCCAACCGCCCCACCATACCGGAGGCCGATTACGTGTGGCGAATCGTCTTAATGTTCGGCGCAATTCCAGCGGCGTTAACTTATTACTGGCGGATGAAAATGCCAGAGACGGCGAGATACACCGCCTTAGTAGCCCAAAATGCAAAACAAGCCGCCGCCGACATGTCGAAAGTGCTGCAAGTGCAACTCGAATTAGCCGAATATGAAAAAACCATGATCGAACCAAATGAAAATCAAAACCGTTTCGGTTTATTCTCTCGCGAATTTGCGAAACGTCATGGGCTCCACTTAATTGGAACCACCACGACGTGGTTTCTGTTAGACATAGCGTTTTACAGCCAAAATCTCTTCCAGAAAGACATTTTCACCGCCATTGAATGGCTTCCATCGGCGGCGACGATGAGCGAATTAGAAGAATGCTTCAAAATCGCACGTGCTCAGACACTAATTGCCCTTTGCGGGACAGTTCCAGGTTACTGGTTCACGGTGGCGCTCATCGATTACTTGGGGAGATTTTTTATTCAATTGATGGGATTCATAATGATGACGATCTTCATGTTTGCTCTGGCGTTTCCTTACAATCATTGGAAGGAGAAGCCTCACAGAATCGGGTTCGTGGTGATGTATTCGTTGACGTTTTTCTTTGCGAATTTCGGGCCGAATTCGACGACGTTTATAGTGCCGGCGGAGATATTTCCGGCGAGGTTGAGGTCGACATGTCATGGGATATCGGCGGCGGCGGGAAAAGCAGGGGCAATAGTGGGAGCGTTTGGGTTTTTGTATGCAGCGCAGAGTAAGGATCCGAAACTGACGGATCCGGGCTACCCGACGGGGATCGGAGTGAAGAATGCTTTGATTGTGTTGGGATGTGTAAATTTCTTGGGGGCATTGTTTACTCTGTTAGTGCCGGAATCGAAAGGGAAGTCATTGGAGGAGCTGACAGGGGAGAATGACGGGAAGGACAGGAATGGGAATACCATTGCAGATATACATACCGATGTAAATGTCTAA 1614 51.12 MSQQVGVLNALDIAKTQWYHFTAIIIAGMGFFTDAYDLFCISIVTKLLGRIYYHIPNSPRPGSLPPNIAAAVNGVAFCGTLSGQLFFGWLGDKLGRKKVYGITLILMVVCSIASGLSFGNSPKAVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILGGGIVALIVSSAFNNRFPAPPYMDNPNRPTIPEADYVWRIVLMFGAIPAALTYYWRMKMPETARYTALVAQNAKQAAADMSKVLQVQLELAEYEKTMIEPNENQNRFGLFSREFAKRHGLHLIGTTTTWFLLDIAFYSQNLFQKDIFTAIEWLPSAATMSELEECFKIARAQTLIALCGTVPGYWFTVALIDYLGRFFIQLMGFIMMTIFMFALAFPYNHWKEKPHRIGFVVMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPKLTDPGYPTGIGVKNALIVLGCVNFLGALFTLLVPESKGKSLEELTGENDGKDRNGNTIADIHTDVNV 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8259503 8261116 + CcPI632755_06g007250.1 Cco06g0725 181325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0725 537 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 9 513 - -
Cco06g0725 537 FunFam Inorganic phosphate transporter 1-6 19 529 - -
Cco06g0725 537 NCBIfam phosphate:H+ symporter 10 517 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Cco06g0725 537 MobiDBLite consensus disorder prediction 513 537 - -
Cco06g0725 537 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 508 IPR020846 GO:0022857(InterPro)
Cco06g0725 537 CDD MFS_PhT 24 507 - -
Cco06g0725 537 Gene3D MFS general substrate transporter like domains 19 530 IPR036259 -
Cco06g0725 537 MobiDBLite consensus disorder prediction 513 528 - -
Cco06g0725 537 SUPERFAMILY MFS general substrate transporter 11 514 IPR036259 -
Cco06g0725 537 Pfam Sugar (and other) transporter 25 514 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0498 Cco-Chr5:3986016 Cco06g0725 Cco-Chr6:8259503 3.60E-255 dispersed
Cco05g1032 Cco-Chr5:9084874 Cco06g0725 Cco-Chr6:8259503 5.80E-183 dispersed
Cco06g0725 Cco-Chr6:8259503 Cco07g0119 Cco-Chr7:1283427 1.80E-238 dispersed
Cco08g0685 Cco-Chr8:18155511 Cco06g0725 Cco-Chr6:8259503 6.40E-88 transposed
Cco05g0497 Cco-Chr5:3970309 Cco06g0725 Cco-Chr6:8259503 2.10E-231 wgd
Cco06g0725 Cco-Chr6:8259503 Cco07g0102 Cco-Chr7:1049884 4.10E-238 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0725 K08176 - csv:101212412 981.859