Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0736 ATGGGGCATCCGAATCATGAAGACAGAGTGTTCCTCTTCTTCACTGCTGCTTCTTCTTCACCCGAAATCGCGGGCCGTTCATTATCCGATCTACGAGGTCGGATGTGTCTACTGCTCTCAAAATCACATTATCTAACCTACTGGAGACGTACTGCTCAGTATATGTATATTTGCCGTACCACAACGTACTGGGTGAACTATGTCATATCCAAAGACAAGCCAAAGCCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCAAGAGCACCAACCAGTGAAGATGTACCCTCAAATGTGACCAAGCAGAAGGTTGCAGCTGCCAAGCAGTACATAGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTACTGGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAGGAAGAGCAAAGCAACCTGCTCAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACACGTGAAAGCTGAAAGGAATCTATTGGCGGAAGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCCGGTGGAGATATGATGACTTTGCTGATGAGGAAAGATACTCTAACGGAAGACGAGGCTCGGTTTTATGTTGGTGAAACAGTTTTAGCTATCGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCGGATAACTTACTTCTTGACAAGGACGGCCATATGAAATTATCAGATTTCGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAGTAACCTCAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTGGCATCAAAACGCACACAACAGGAACAACTGCAGCATTGGCAAAGGAATAGGCGGATGCTTGCTTATTCAACAGTTGGAACTCCTGATTATATTGCCCCGGAAGTTTTGTTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTACGAAATGCTTGTGGGGTTCCCACCGTTTTACTCAGATGAGCCAATGTCAACTTGCAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCGGAAGAAGCAAAGCTCTCTCCAGAAGCGAAGGATCTAATCAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCGTGGTTCAAGGGCATTGAGTGGGATAAGTTGTATCAGATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAACTTTGAGAAGTTTGAAGAGACTGAAAACGCAATTCAAACTTCATCAAAATCAGGTCCATGGAGAAAGATGTTGTCATCGAAGGATATCAATTTTGTTGGTTATACGTACAAAAACTTTGAAATCATTGATGATAATCAATTGCCTGGAATCGCTGAACTGAAGAAGAAGACCGCAAAATCTAAAAGACCTTCCATCAAATCACTTTTTGATAACGAATCTGCAATGGCTAATCAACCTGTTCAAGGAAGCTTTCTGAAACTCTTGCCTCCCCAACTAGAAGTCCCTGAGAAACCGATGAGCGCCAATGAGAAGCATTCATGA 1827 42.15 MGHPNHEDRVFLFFTAASSSPEIAGRSLSDLRGRMCLLLSKSHYLTYWRRTAQYMYICRTTTYWVNYVISKDKPKPSTNKESTGNARDASRAPTSEDVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENAIQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKTAKSKRPSIKSLFDNESAMANQPVQGSFLKLLPPQLEVPEKPMSANEKHS 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8388269 8395767 + CcPI632755_06g007360.1 Cco06g0736 181336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0736 608 Coils Coil 125 159 - -
Cco06g0736 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0736 608 ProSiteProfiles Protein kinase domain profile. 176 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0736 608 Gene3D Phosphorylase Kinase; domain 1 166 261 - -
Cco06g0736 608 CDD MobB_NDR_LATS-like 110 171 - -
Cco06g0736 608 FunFam Non-specific serine/threonine protein kinase 260 327 - -
Cco06g0736 608 MobiDBLite consensus disorder prediction 79 103 - -
Cco06g0736 608 ProSitePatterns Protein kinases ATP-binding region signature. 182 205 IPR017441 GO:0005524(InterPro)
Cco06g0736 608 ProSiteProfiles AGC-kinase C-terminal domain profile. 476 548 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0736 608 FunFam Non-specific serine/threonine protein kinase 147 259 - -
Cco06g0736 608 SMART serkin_6 176 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0736 608 FunFam Non-specific serine/threonine protein kinase 374 493 - -
Cco06g0736 608 Gene3D Transferase(Phosphotransferase) domain 1 262 492 - -
Cco06g0736 608 PANTHER SERINE/THREONINE-PROTEIN KINASE 85 542 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cco06g0736 608 SUPERFAMILY Protein kinase-like (PK-like) 151 528 IPR011009 -
Cco06g0736 608 CDD STKc_NDR_like 174 539 - -
Cco06g0736 608 MobiDBLite consensus disorder prediction 74 103 - -
Cco06g0736 608 Pfam Protein kinase domain 178 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0736 608 Pfam Protein kinase domain 372 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0736 608 SMART pkinase_C_6 476 540 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0736 608 Pfam Protein kinase C terminal domain 494 538 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1885 Cco-Chr1:31344574 Cco06g0736 Cco-Chr6:8388269 4.40E-33 dispersed
Cco04g2329 Cco-Chr4:36752094 Cco06g0736 Cco-Chr6:8388269 4.10E-223 dispersed
Cco05g2046 Cco-Chr5:29528296 Cco06g0736 Cco-Chr6:8388269 2.60E-183 dispersed
Cco06g0736 Cco-Chr6:8388269 Cco09g0775 Cco-Chr9:7115546 3.70E-243 dispersed
Cco06g0736 Cco-Chr6:8388269 Cco03g1590 Cco-Chr3:30519130 2.70E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86914 PF00069 Pkinase 1.30E-65 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0736 K08790 - csv:101205120 1084.32