Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0736 | ATGGGGCATCCGAATCATGAAGACAGAGTGTTCCTCTTCTTCACTGCTGCTTCTTCTTCACCCGAAATCGCGGGCCGTTCATTATCCGATCTACGAGGTCGGATGTGTCTACTGCTCTCAAAATCACATTATCTAACCTACTGGAGACGTACTGCTCAGTATATGTATATTTGCCGTACCACAACGTACTGGGTGAACTATGTCATATCCAAAGACAAGCCAAAGCCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCAAGAGCACCAACCAGTGAAGATGTACCCTCAAATGTGACCAAGCAGAAGGTTGCAGCTGCCAAGCAGTACATAGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTACTGGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAGGAAGAGCAAAGCAACCTGCTCAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACACGTGAAAGCTGAAAGGAATCTATTGGCGGAAGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCCGGTGGAGATATGATGACTTTGCTGATGAGGAAAGATACTCTAACGGAAGACGAGGCTCGGTTTTATGTTGGTGAAACAGTTTTAGCTATCGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCGGATAACTTACTTCTTGACAAGGACGGCCATATGAAATTATCAGATTTCGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAGTAACCTCAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTGGCATCAAAACGCACACAACAGGAACAACTGCAGCATTGGCAAAGGAATAGGCGGATGCTTGCTTATTCAACAGTTGGAACTCCTGATTATATTGCCCCGGAAGTTTTGTTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTACGAAATGCTTGTGGGGTTCCCACCGTTTTACTCAGATGAGCCAATGTCAACTTGCAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCGGAAGAAGCAAAGCTCTCTCCAGAAGCGAAGGATCTAATCAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCGTGGTTCAAGGGCATTGAGTGGGATAAGTTGTATCAGATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAACTTTGAGAAGTTTGAAGAGACTGAAAACGCAATTCAAACTTCATCAAAATCAGGTCCATGGAGAAAGATGTTGTCATCGAAGGATATCAATTTTGTTGGTTATACGTACAAAAACTTTGAAATCATTGATGATAATCAATTGCCTGGAATCGCTGAACTGAAGAAGAAGACCGCAAAATCTAAAAGACCTTCCATCAAATCACTTTTTGATAACGAATCTGCAATGGCTAATCAACCTGTTCAAGGAAGCTTTCTGAAACTCTTGCCTCCCCAACTAGAAGTCCCTGAGAAACCGATGAGCGCCAATGAGAAGCATTCATGA | 1827 | 42.15 | MGHPNHEDRVFLFFTAASSSPEIAGRSLSDLRGRMCLLLSKSHYLTYWRRTAQYMYICRTTTYWVNYVISKDKPKPSTNKESTGNARDASRAPTSEDVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENAIQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKTAKSKRPSIKSLFDNESAMANQPVQGSFLKLLPPQLEVPEKPMSANEKHS | 608 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8388269 | 8395767 | + | CcPI632755_06g007360.1 | Cco06g0736 | 181336 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0736 | 608 | Coils | Coil | 125 | 159 | - | - | |
Cco06g0736 | 608 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 295 | 307 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0736 | 608 | ProSiteProfiles | Protein kinase domain profile. | 176 | 475 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0736 | 608 | Gene3D | Phosphorylase Kinase; domain 1 | 166 | 261 | - | - | |
Cco06g0736 | 608 | CDD | MobB_NDR_LATS-like | 110 | 171 | - | - | |
Cco06g0736 | 608 | FunFam | Non-specific serine/threonine protein kinase | 260 | 327 | - | - | |
Cco06g0736 | 608 | MobiDBLite | consensus disorder prediction | 79 | 103 | - | - | |
Cco06g0736 | 608 | ProSitePatterns | Protein kinases ATP-binding region signature. | 182 | 205 | IPR017441 | GO:0005524(InterPro) | |
Cco06g0736 | 608 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 476 | 548 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0736 | 608 | FunFam | Non-specific serine/threonine protein kinase | 147 | 259 | - | - | |
Cco06g0736 | 608 | SMART | serkin_6 | 176 | 475 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0736 | 608 | FunFam | Non-specific serine/threonine protein kinase | 374 | 493 | - | - | |
Cco06g0736 | 608 | Gene3D | Transferase(Phosphotransferase) domain 1 | 262 | 492 | - | - | |
Cco06g0736 | 608 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 85 | 542 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Cco06g0736 | 608 | SUPERFAMILY | Protein kinase-like (PK-like) | 151 | 528 | IPR011009 | - | |
Cco06g0736 | 608 | CDD | STKc_NDR_like | 174 | 539 | - | - | |
Cco06g0736 | 608 | MobiDBLite | consensus disorder prediction | 74 | 103 | - | - | |
Cco06g0736 | 608 | Pfam | Protein kinase domain | 178 | 327 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0736 | 608 | Pfam | Protein kinase domain | 372 | 475 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0736 | 608 | SMART | pkinase_C_6 | 476 | 540 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0736 | 608 | Pfam | Protein kinase C terminal domain | 494 | 538 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1885 | Cco-Chr1:31344574 | Cco06g0736 | Cco-Chr6:8388269 | 4.40E-33 | dispersed | |
Cco04g2329 | Cco-Chr4:36752094 | Cco06g0736 | Cco-Chr6:8388269 | 4.10E-223 | dispersed | |
Cco05g2046 | Cco-Chr5:29528296 | Cco06g0736 | Cco-Chr6:8388269 | 2.60E-183 | dispersed | |
Cco06g0736 | Cco-Chr6:8388269 | Cco09g0775 | Cco-Chr9:7115546 | 3.70E-243 | dispersed | |
Cco06g0736 | Cco-Chr6:8388269 | Cco03g1590 | Cco-Chr3:30519130 | 2.70E-185 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86914 | PF00069 | Pkinase | 1.30E-65 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0736 | K08790 | - | csv:101205120 | 1084.32 |