Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0741 ATGGTTTCGTATGTGTCGCTTTCTGGCAGCGTTTCGTCCATGCCGTTTCTTCTTCAACTTTTTACTTACAGTTCCCAGCTCTTCATTTGGTGGCACAAACCTGCTTATCGGTCTTTCGCAATGAAGTCTTCCACTAGGCTTGATTCGGCTACTTTTCAGCTCACACCTACTCGAACCAGGTGTGATTTGATTATATCTGCAAATGGAAGGTCTGAGAAGATAGCTTCGGGTTTATTGAATCCTTTTCTTGCCCATTTGAAGATTGCACAAGAACAGATGGCCAGAGGTGGTTATTCCATTATTCTCGAGCCAGACCCTCGCAATGATAGAACATGGTTCACAAAGGGTACCATGGAGAGGTTTGTCCGATTTGTAAGCACCCCTGAAATTTTGGAACGGGTGTACACTACTGAATCAGAGATATTACAGATTGAGGAGGCAATCGTGATTCAGGGCAACAATGACATGGGGCCAAATGTTGTAGATGAAAAGCAAGGAAAGCCTACAAAACCTCCTGAAAGCACCACCGAAGGTACCAAAATCAGTGGAGCAAGCAAGACTCTTCTGGATGGTAACGAGGAGAAAGCAATCGTTTTATACAAGCCTGATGCAAATTCACTGGAGGCCAATGGACATATGGTATCAGAGGAGAACTCAAAAGCGCAGCTTCTTAAAGTCCTGGAGACACGCAAAATTATGCTGCAAAAGGAGCAAGGAATGGCTTTTGCTCGTGCTGTTGCTGCTGGTTTTGACATTGATCAGATGTCACCATTGTTATCATTTGCCAACAACTTTGGAGCCTCACGATTGATGGGTGCATGCTTAAAATTCAAAGAACTATGGAAAAGAAAGCATGAAAGTGGCCAATGGCTTGAAATTGAAGCAGCAGAAGCAGTGTCCAGCCGGCCAGACTTTTCCCCCTCCACAAATACGTCAGGCATTATACTTACAAGTTTGACTGACAAGCAGACAGAATCTAGAGAAGCATGGCCTGAATCTCAACATGAACCATCTTCAACAATGAAGGGGAATGCAAGTGCAGATGGAAATACACCTATGATGTACCAGTCACCACCAGGCCACCAAGAGTATCTTCAAGGGCAGTATCCCCATCATATGTACCCTTCCTGGCCCATCAAGTCTCCTCCAGGTGCATTGCCTGTCTTTCAAGGAATGCCTTACTATCAGAACTATGCAGGAAGTAGCCCTTTCTTTCATCCGCATTATCCCATGACAGAGGATTCTCGCCTGGGTGACGGTAAAAAAATGGGAGGCAAAAGGCACTCCATGGATAGTGGAGATAACTCCATTGAACCAGAAACCTGGGAGACAAATGCTTCAAAAACAAGAATACCTGATGATGCGGAATCAGAGCAAGAAGCTTCTGAAGATCTGAGAAAAGCCAGTCACTCAGGTAAAAGGAAATCAGGTGTGGTTGTCATCCGCAACATCAACTACATTGCATCGAAGAGGCACAATTCATCAGGTAGCGAAACAGATTCACTGTCTGAAAGTGAAAGTGGGGAAGATGGAGATTCGCAGGCTATTAGTCCAGAAATTAAACACAAGAAATCTACTAGATCAAGGAGCAAAGGAAAACATCTAAATTTTGAAGATCAATCAAATACTCCGGCAAAAACTGTTTCACCAGAAGCTGATGGACATTGGCAGGCATTCCAAAGCCTTTTACTTCGAGATGCTGATGCAGACGAGCCTCATGCTGATCAAAGCCTGTTTACCATGGAACGTGAGACCAAGCAGAAAAGGCGACAAAATAAAGTTGGTGATGATCCATTAATTGCTCGTGGATCAAACAGAGAAGAAATCCAAGAAAATGGTGCTACAGATATCGATAGAGTTGGTGGAAGAATCAACTGTATGTCAAGGGCATCAAATGATGAATTATTAACTTCTCGAAGAGATAGCCTATCTGGGGATGGTCATTTGAATGTGCAGGCTACAGAACTTGATGGAGGAAGAAATGGCTACAGGAGGTCTGGTGGTGATGATTTTATGGTTTACGGACAAAAGGGTCAAACTCTCTTGAATGCCCACTTGGATCCATTAGCTGTAAGTGGCTTTGATATTACAAAAACGAGCTATGATAAAAATTCTTCAAATAATTTGGATGGTGATTCTTACATAGTTCCATTAAGATCGATGTCAATAGATGCAGTTGGAAAGGAAGGTAGAACTGCTGTTGACATGGATTCCGAGTTTCCATCTTCAAATCGTAAGGCAGAAAACTTGTCCAATAGAGTTGCTACCTACGAGCCAGATGTACTGAATCTGATGCCAAAGCGTGAAACAGAAAATGAACCTGCTGGTTATCATCCTGCTTTAGAATATGAAATGCAGGTCCATGCTGGACGTTTACCAGCTATGGATAAAAAGAAGGAAGTGGTAACAGATGTTAAAAAAGGGGTTAAAAGGTCGGACAATGATCGTAAGCCAAAAATCACTCCGGATAGGAAAACTGGGGGGCCAATACGGAAGGGAAAGCCTTCTAAGTTGAGTCCTTTAGATGAAGCACGAGCACGTGCTGAAAAGCTAAGAACTTATAAAGCTGATCTCCAGAAATTGAAGAAGGAGAAGGAGGAGGAAGCAATAAAAAGAATAGAAACTTTGAAGCTAGAGAGGCAGAAGAGAATTGCAGCAAGGGGTAATAATAGCAACACTGCTCAGTCATCATTGCCCTCTCAGCAAACTAGAAAGCTCCTGCCAACAAAAATGTCACCCAACTCTCAGAAAGGATCAAAATTTAGTGATTCAGATCCAGGACCATCATCTCCTCTGCAAAGGTTCCCCATCAGAACGCCTTCAATTGGTTCCAACGATTCCAATAAAGCTGCAAAACCCAGCAGACTGAACAGTGGAAATCACTCAGCTGGAAACCGGTTAATTCAATCTGTACCTTCATTAACTAAGCTAAAGAAAGAGAACAGTGATGCCACAAATGACAAAAAAGTATCCATGGCTCGAATTAGAAGATTATCAGAGCCAAAAATGAGTATCAGCAATCATGCGTCTTCTACCAAGAAACGGAGCCCCGAGCCACCTTTAAAGGCAAAAGTACCTAATGAGACTGAAAGCAAAAAGAAGATATCTGCTATATTGAATTTGGATAAGAGCAAGGCTGCAACTCTTCCAGAACTTAAAATTAGAACGCCCAAGGGACCTGGTGCTACAATTGGCAACTCAAAAGCACAAGAAACAATGCAGAGTGTGAATTATCCTTCGGTTTCTGAAGGTGTTTCTGCTTCCATGGAAAGAATCACTGCCAAAGTCTCACATCGTAATGAACTGGATGACAACCCTGTTGTTGAAAAGACTGTTGTAATGCTTGAATATCAGAAGCCCTCTATCCGTACAGGTCCTGCATCTGAAGACAATCTCAATCCCCAAATTGAAGTGTCCGGTGGCAATAGAGAACCCAGCAAGCACCAATCACAGAGTCAGTTGAGTTCCCATGAGGTGACAGCAGATGGTGCATCAGCTCATGAGGCACAAAAGTTTTCATCTCCCAGTACAACTGAAAAATTATATAAAGCTCCACATGCTCGTGTTTCTTCTTTTGAAGATCCTTGCACACGCGTTTCAGAGTATGGAAAAGCAACCCCATCAGATTTGGAGAGTGCAGCAAAAGGATCTGAGACGGCAAAAGCTTATGTTTCTGATTATGGAAATGCACAATTGGAAAAGATTCCTGAAGCATTGGAGAAGCCTGAGGTAAAAAAATCATCAAAAGGACTTAGACTATTACTGAAGTTTGGAAGAAAGAATCAAAGCCCGGCTACAGATGAGCATAATGATGAATCAGATAATATCAGCACAAATGGTTCTGAAGCCAATGATGTTGGGACAAATACCACTTCTAACAATGAAGTTCCTACACTGAAAAATCTGATATCTCAAGATGAAACCGCCACTGCCAGCAAAACTCAGAAGTCTTCTCGTGCATTTTCCCTCCTATCACCTTTCCGGACGCAAATGTGTTTGGGTTATGAAGGATACAGCGCCATGTCTCATACTATTCAAGGAATGGAGGAACATCGCTTGGAAAAAGTCACGTTGTAA 4077 42.68 MVSYVSLSGSVSSMPFLLQLFTYSSQLFIWWHKPAYRSFAMKSSTRLDSATFQLTPTRTRCDLIISANGRSEKIASGLLNPFLAHLKIAQEQMARGGYSIILEPDPRNDRTWFTKGTMERFVRFVSTPEILERVYTTESEILQIEEAIVIQGNNDMGPNVVDEKQGKPTKPPESTTEGTKISGASKTLLDGNEEKAIVLYKPDANSLEANGHMVSEENSKAQLLKVLETRKIMLQKEQGMAFARAVAAGFDIDQMSPLLSFANNFGASRLMGACLKFKELWKRKHESGQWLEIEAAEAVSSRPDFSPSTNTSGIILTSLTDKQTESREAWPESQHEPSSTMKGNASADGNTPMMYQSPPGHQEYLQGQYPHHMYPSWPIKSPPGALPVFQGMPYYQNYAGSSPFFHPHYPMTEDSRLGDGKKMGGKRHSMDSGDNSIEPETWETNASKTRIPDDAESEQEASEDLRKASHSGKRKSGVVVIRNINYIASKRHNSSGSETDSLSESESGEDGDSQAISPEIKHKKSTRSRSKGKHLNFEDQSNTPAKTVSPEADGHWQAFQSLLLRDADADEPHADQSLFTMERETKQKRRQNKVGDDPLIARGSNREEIQENGATDIDRVGGRINCMSRASNDELLTSRRDSLSGDGHLNVQATELDGGRNGYRRSGGDDFMVYGQKGQTLLNAHLDPLAVSGFDITKTSYDKNSSNNLDGDSYIVPLRSMSIDAVGKEGRTAVDMDSEFPSSNRKAENLSNRVATYEPDVLNLMPKRETENEPAGYHPALEYEMQVHAGRLPAMDKKKEVVTDVKKGVKRSDNDRKPKITPDRKTGGPIRKGKPSKLSPLDEARARAEKLRTYKADLQKLKKEKEEEAIKRIETLKLERQKRIAARGNNSNTAQSSLPSQQTRKLLPTKMSPNSQKGSKFSDSDPGPSSPLQRFPIRTPSIGSNDSNKAAKPSRLNSGNHSAGNRLIQSVPSLTKLKKENSDATNDKKVSMARIRRLSEPKMSISNHASSTKKRSPEPPLKAKVPNETESKKKISAILNLDKSKAATLPELKIRTPKGPGATIGNSKAQETMQSVNYPSVSEGVSASMERITAKVSHRNELDDNPVVEKTVVMLEYQKPSIRTGPASEDNLNPQIEVSGGNREPSKHQSQSQLSSHEVTADGASAHEAQKFSSPSTTEKLYKAPHARVSSFEDPCTRVSEYGKATPSDLESAAKGSETAKAYVSDYGNAQLEKIPEALEKPEVKKSSKGLRLLLKFGRKNQSPATDEHNDESDNISTNGSEANDVGTNTTSNNEVPTLKNLISQDETATASKTQKSSRAFSLLSPFRTQMCLGYEGYSAMSHTIQGMEEHRLEKVTL 1358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8453054 8461351 + CcPI632755_06g007410.1 Cco06g0741 181341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0741 1358 MobiDBLite consensus disorder prediction 885 1030 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 320 358 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 410 476 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 155 183 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 980 996 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 491 552 - -
Cco06g0741 1358 PANTHER COP1-INTERACTING PROTEIN-RELATED 41 1328 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 1015 1030 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 1276 1300 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 491 512 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 1120 1193 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 1124 1160 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 333 358 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 412 434 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 1258 1300 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 447 471 - -
Cco06g0741 1358 Coils Coil 841 871 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 885 979 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 576 616 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 576 614 - -
Cco06g0741 1358 MobiDBLite consensus disorder prediction 792 843 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0741 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0741 Cco-Chr6:8453054 Cco11g1875 Cco-Chr11:31413222 1.20E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g727 Blo01g00089 Blo12g00369 Bda03g00841 Bda08g00276 . . Bma04g00739 . Cmo08g01052 Cmo17g00154 . . . . . . . . . . . . . . Cla06g00675 Cam06g0725 Cec06g0732 Cco06g0741 Clacu06g0716 Cmu06g0701 Cre06g1472 Cone14ag0156 Cone15ag0168 . . . Csa02g01051 Chy05g00312 . . . . . Bpe05g00856 . . . . . . Cma08g01077 Cma17g00155 Car08g00950 Car17g00138 Cpe12g00133 Cpe17g00200 Bhi12g01604 Tan06g2399 . . . . Lcy13g0386 . . . . . . . Lsi09g01225 . . Cme05g00580
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003371 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 3 1 6 4 1 49