Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0744 ATGGCTCCAACACCATCTTCTAAATCAAATCAAAGTCACATGAGCCAATTGAGAACTCCTCAAGCCAAGCGGCTCAATTTCAATCCCCCTAGGGCACATTCATCCCCTTTCCCCAATTCCGCCATTAAAGACTCCCAATCTGAGCATCCGGTTGAAGTAATCGGCCGGATCCGAGACTATCCGGACCGGAAAGAGAAACCGGTTTCGATTCTGCAGATAAATCCCGATGGACAGAACGTTCGTGTTCGGGCCGATTTCGGTTACAGGGATTTCAGTCTCGACGGGATTTCGCTGTCGGAAGAGGAGGATCTCGACTCGTTTTACAAGAAGTTCGTCGAAGCGAGGATTCATGGTGTTAAGTTGGGTGAGAAATGTACGATTATGATGTACGGACCCACCGGTGCCGGCAAGAGCCACACGATGTTTGGCTGTGCGAAGCAGCCGGGGATTGTGTATCGGTCGCTGAAGGACATTTTAGGCGACGGAGAAAGTGAAGCCGCCACTGCCGCCGGAGCAGGTGGCGGCGACCGGCCGAACGTTGGAATGTTTGTACAAGTTACGGTTCTGGAGATCTATAATGAAGAAATATATGATCTTCTATCGAGTAATTCTGGTGGAGGGCTAGGGCTTGGCTGGCCTAAGGGCAGTGCCTCTAAGGTGAAACTTGAAGTGATGGGAAAGAAGGCAAAGAATGCTACTTATCTATCTGGGAATGAAGCAGGAAAGATTTCCAAAGAGATTCAGAAAGTGGAGAAAAGAAGGATTGTTAAAAGTACACTCTGTAATGAGAGAAGTTCTAGAAGCCATTGCATGATAATCCTTGACGTGCCGACCGTTGGTGGGCGCCTTATGCTCGTTGATATGGCTGGTTCTGAAAATATAGAGCAAGCTGGGCAAGTTGGATTTGAGGCAAAAATGCAGACAGCAAAGATTAATCAAGGCAACATTGCACTGAAAAGAGTGGTTGAATCAATTGCCAATGGTGATTCTCATGTGCCTTTCAGAGACAGTAAATTGACCATGCTTCTGCAGGATTCTTTTGAGGATGATAAATCCAAAATTCTGATGATTCTGTGTGCCAGCCCTGATCCAAAGGAATTACACAAGACAATCTCTACTCTCGAATATGGTGCGAAAGCCAAATGCATTGTCCGTGGTCCTCATACACCGACGAAGGATAAATGTGGTGCTGATGATTCTGCTTCTGCTGTTATTCTGGGATCGAGAATTGCGGCCATGGACGATTTCATCTTCAAGTTACAGAAGGAGAACAAACTTAGAGAGAAAGAGCGAAATGAGGCAAATAGAGAACTCATGAAGAAAGAAGAAGAGGTATCAGCATTGAGAGCTAAGCTTGAGCTAGCGGGGTCAAAAGGATCAGGCGTGAGTGAGGAAGAGATCAATTCAAAGGTGAATGAGAGAACCCAACTTCTGAAACTTGAGTTGGAAAGAAAGCTGGAGGAGTGCCAGAGAATGGCCAATGAATTTGTTGAATTGGAAAGGAGAAGGATGGAAGAAAGAATACTGCAGCAGCAACAAGAAGTCGAAATGTTGAGACGGCGATTGGAAGAGATCGAATCCGAGCTATTGAATACAAGGGATGCAACAAGCAACGATGTAAACAAATCAAGGGACATGGATGGCTGCAGGCTTGCTAAAAGGCTTTTAGGAGTATATGCTAGTGCAGATGCAGGGATGGTGAAGTCCATGGACTTGGACATGGATGATCAAGAACCGATTCGTGAAGTAAAACTCATCGGCGGTGTGGATTATCAACTGACTAGCAACAATGGTATCCAAAGCCTACTAGACAAAGTGAACGAGAAAGTTGATCATGACATGTTTTCATCGCGGTTTGGGGATGGGGATAGAGTATGCCTGAGTACCGTGTTCGAGGAAGAAGAAGCAGAAGAGGAAGAGGAAAAGGAAGTTATAGAAGAAAAGAGAGTGTGTTCTGTTGAAGGACTCACCGAACTGACACCGAATGTTCTGAACAAAAGTCAGAACAAAGATGACTTTCTCAAGGAGAGATCAGAGATTGGCATCGGATCGTTAAACGACAACGAATACTCCAAGGATACCGCATTCTCGAGAAAATTGAGAATTCAAAATATATTTACTCTTTGCGGAAATCATAGAGAGCTTTCCCAACAAATTGCCGCGGTACCTGAGAAGAAGAGATTTGATGATGCTGAAAATGAGCACCCTTCATCTCCACTGAAGACAATTGGGGAAGTTCAGAAGCCTGCACTATATCATTACACTCAAATTCTTTCAGACCTGACGAACCAGAATGGAGCTGTATTGACAGAAAATGAAGAGACAATGCAGCCTATAAAGCTACTACAAGTAAAGGGAGGAGCAAACAGCCCTGGTGTTGTACCATTGAGTCCAATTCCATTGTGCTCAAAGGAGAACAAGCTACCCGTCACGCCGAACATCGTATCGCAGCAAAGTGATGGCCTATCACCGAGGCTGAGCGCTACGCCATTCATCACTATAAGAAGACACTGA 2514 45.31 MAPTPSSKSNQSHMSQLRTPQAKRLNFNPPRAHSSPFPNSAIKDSQSEHPVEVIGRIRDYPDRKEKPVSILQINPDGQNVRVRADFGYRDFSLDGISLSEEEDLDSFYKKFVEARIHGVKLGEKCTIMMYGPTGAGKSHTMFGCAKQPGIVYRSLKDILGDGESEAATAAGAGGGDRPNVGMFVQVTVLEIYNEEIYDLLSSNSGGGLGLGWPKGSASKVKLEVMGKKAKNATYLSGNEAGKISKEIQKVEKRRIVKSTLCNERSSRSHCMIILDVPTVGGRLMLVDMAGSENIEQAGQVGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKELHKTISTLEYGAKAKCIVRGPHTPTKDKCGADDSASAVILGSRIAAMDDFIFKLQKENKLREKERNEANRELMKKEEEVSALRAKLELAGSKGSGVSEEEINSKVNERTQLLKLELERKLEECQRMANEFVELERRRMEERILQQQQEVEMLRRRLEEIESELLNTRDATSNDVNKSRDMDGCRLAKRLLGVYASADAGMVKSMDLDMDDQEPIREVKLIGGVDYQLTSNNGIQSLLDKVNEKVDHDMFSSRFGDGDRVCLSTVFEEEEAEEEEEKEVIEEKRVCSVEGLTELTPNVLNKSQNKDDFLKERSEIGIGSLNDNEYSKDTAFSRKLRIQNIFTLCGNHRELSQQIAAVPEKKRFDDAENEHPSSPLKTIGEVQKPALYHYTQILSDLTNQNGAVLTENEETMQPIKLLQVKGGANSPGVVPLSPIPLCSKENKLPVTPNIVSQQSDGLSPRLSATPFITIRRH 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8473333 8476700 - CcPI632755_06g007440.1 Cco06g0744 181344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0744 837 SMART kinesin_4 48 391 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0744 837 Coils Coil 628 648 - -
Cco06g0744 837 Coils Coil 472 535 - -
Cco06g0744 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 390 IPR027417 -
Cco06g0744 837 Pfam Kinesin motor domain 86 383 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0744 837 PANTHER KINESIN-RELATED 51 690 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005871(PANTHER)|GO:0005874(PANTHER)|GO:0007018(InterPro)|GO:0007018(PANTHER)|GO:0008017(PANTHER)|GO:0016887(PANTHER)
Cco06g0744 837 MobiDBLite consensus disorder prediction 1 49 - -
Cco06g0744 837 ProSiteProfiles Kinesin motor domain profile. 50 383 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0744 837 Coils Coil 417 458 - -
Cco06g0744 837 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 33 388 - -
Cco06g0744 837 Gene3D Kinesin motor domain 32 386 IPR036961 -
Cco06g0744 837 MobiDBLite consensus disorder prediction 1 23 - -
Cco06g0744 837 PRINTS Kinesin heavy chain signature 282 300 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0744 837 PRINTS Kinesin heavy chain signature 332 353 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0744 837 PRINTS Kinesin heavy chain signature 259 276 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0744 837 PRINTS Kinesin heavy chain signature 122 143 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0744 837 MobiDBLite consensus disorder prediction 32 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0744 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1387 Cco-Chr1:24903167 Cco06g0744 Cco-Chr6:8473333 1.80E-10 dispersed
Cco06g0744 Cco-Chr6:8473333 Cco07g1137 Cco-Chr7:25075881 1.30E-28 dispersed
Cco06g0744 Cco-Chr6:8473333 Cco04g1043 Cco-Chr4:25977878 2.00E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g730 . . . . . Bpe14g01263 . . . . Cma06g01315 . Car06g01130 Car14g01631 . Cpe08g00340 Cpe03g01523 Bhi01g00717 . . . Hepe05g1665 . . Cla06g00677 Cam06g0727 Cec06g0735 Cco06g0744 Clacu06g0719 Cmu06g0703 Cre06g1475 . . Cone7ag0331 Cone4ag0336 Lsi05g01742 Csa02g01049 Chy05g00311 Cme06g00480 . Blo07g00270 Bda11g00638 Bda13g00056 . Bpe13g00551 Bma02g00768 Bma06g01605 Sed02g1415 Cmo06g01323 Cmo14g01859 . . Car08g00948 Car17g00136 Cpe12g00131 Cpe17g00202 Bhi12g01601 Tan06g2396 Cmetu06g1413 . . . Lcy13g0388 Cla05g00436 Cam05g0475 Cec05g0484 Cco05g0484 Clacu05g0472 Cmu05g0450 Cre05g0512 Lsi09g01222 Csa03g01198 Chy06g00462 Cme05g00582
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006035 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 2 1 1 39