Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0749 ATGAGCACGCATAGTTGCTCAAAACAATACAGTAGAAGGAGTAAAAAGCAGACCCAGAGCAACTCTAATGATGAAAGTGCAGCTCGAACTAGGCCACTCAGCTTTGAAGACATTATGCTTAGAAGGAAGAATAAAGGGTCAGCTGCTACTGTTGAGGTGGGTGCCACTGGTAGCCATTCAAGAAGGGAAAGCATAGATAAGCACAGTACTGATAATCGTGCATCTGAAAGGAATCTTCGTCACAGTAAAGGTTATTCTCTTGATGTGCAAAACCTCTCAATTGAGGAATCAGCCAAAGATAGTTCAAGAAGGAAAAAAGAGGAGACATTGTTGAAGGACAATATGGTGGTTAGGAGTGATAGAAATAATTATGAATCTGGATTGTCACTGATGAGTAAGCTTAAATACGACAGGAGTGGAAAGGATAAAATAGAGAAATATGGCCAGGAAAATCTTGGTTGGGGAAAAAATGACCAGAGTTCTAGAATTGACATTGAAACTGAAACTGGAAAGAGGCATTCAAGAGATACAGCTGGCAAGGATAGACGTGAAGATCATGGTAGGGGGAAATTTGAAAGAGAAAATAAGAGAAAATCTCAAAATGGTGATGATGACAGGAATAGAGACAAGTACATTGCAAAGAGACATGATCATGGCAAACATCGTGACCTAGAAAATAGAGAAAGAAAGGAAGCTAAAGTATCATTGACTTCACATTATGAAGATTCTAGATTGAAAAGAAGACGGAAAAGAAGCCGAGATCGTGAAAGTAAACATAGAAGATCTGTTTCACTTTCTCCAAGACCGCACAAGCACTCAACTAAGTTAGCTAGGCAGAAGGAGTTGCCATTAGATTCTCATGTAAAGAAGTCTGGAAGATGGCGTTCTGATAGTGATAGAACAGGGGATTTTACCAACACTTCCAATAGCCAATACCGGCGACATTCTGGGTCCACAAGTGGGCTTGGTGGCTATTCGCCTAGAAAGAGAAGAACTGAATCTGCTGTCAAGACTCCTTCACCTGCTAGATCACCAGAGAAGAAAAATGAAGTGTTGGATGTTCCTCCAACAGAAAAGGTTAAATTATTTTCTGGCTCAGTTACTTCCAACTTCCAGCCGCCAAATCCTACTGTTTCCTTGGGCATTAGTAATGATCAATCTGGTGGTGCACTCTTTTCTTCTGCTATGGGGAAATCTTTATCAGGGGTTTCTTCAAACAATATAGCAACGAAGACAAAGGTTTCTCTTGATTTGATTCAGCTGACCCAAGCTACTCGGCCAATGAGGAGGCTTTATATTGAAAACTTACCCCATTCTGCATCTGAGAAAGCAATCATTGATTGCCTGAATGGTTTTCTTACGTCTTCAGGTGTTAATCACATTGAAGGAACCCAGCCATGTATTAGTTGTATTATACACAAAGATAGGGCGCAAGCTCTTGTCGAATTTCTTACACCTGAGGATGCTTCAGCAGCTCTTTCGTTTGATGGAAGTGACTTCTCTGGGTCTATTCTAAAGATTCGGCGACCAAAAGATTATATTGAAATTGTAACTGGTGACCTGGACAAGTCGGTGCCGGTAGTAAATGAAATCAATGATGTTGTTGAGGACTCACCAAACAAGATTATTGTTGCTGGGATCTCAAATAGAATATCATCTGAAATGCTTAGGGATATTGTTACTGCATTTGGATGTTTGAAGGCCTATCACTTTGAGATGAATGATGATATTAATGAACCTTGTGCCTTTTTAGAGTACGTTGACCAATCAGTTGTGTCCAAAGCCTGTGCTGGTCTAAATGGTATGAAGATTGGAGGGGAAGTACTGAAAGTGTTTCCAGCTGTTCCTTTTGCATCAACGGAACGTAATGGATGTCAACCATGTTATGGGATCCCAGAGCATGTTAAACCTCTTCTTCAACAGCCATCAGTAGTGTTAAAAGTTAATAATGTGTTTAATGCAGATGTCCTCCCAGTACTCTCTGAGTCAGATATTGATGAAGTTCTTGAAGATATTCGGTTTGAATGTGCTAGGTTTGGAACTGTTAAATCCATGAATTTTGTAAAGCCATGCGATGGCTGTGTCAGTGCAGAAGAAGAATACAAGAAAATTAGTGATGTCACTGATGTGGAGATCAAACATGAGATTCAGGAAAACAGTACAATGGTGATTTCAAGAAACAATAATGATCTTGAAGATAACTATGCTAACCTTGATAATTGCCCCAATGATACCAATCAGAAGCAGGTTAATTCCCCTAGCAATGGTAGACATCAGGACGAAGGTGTGGAGGACAAATTCTGTCAAATGGGTAACGATGATGCTACATGTTTTGAATTCGTAGCTTGTGAGAATGCTTCAGAAAGAATCCCTCAAGGACTCTCTGACCAGCGAAGCAGCCCAGAAAATGAACTTCAGAATGCAAAAGTAGCTGAAATAATTGAAACTGATGAAACTGGCTCGGACAAGAAATCGGTTTGTCTAGATTCACCTATGGTGGTGGATGATAATGAGAAGAAAGTTCTAAATGGATTGGATCCCATGTTGAGAACAGGTTCTGACGCATCTGATAAAAGCGAAAAGAAGGATCCTAATAATAATCTGGAGAGTTTATTTGTGTTGGGGAGTGTCTTTGTCGAGTTTGGCAGAATGGAAGCCTCGTGTATGGCTGCACATTCTTTACATGGTAGGATTTATGATGGACAAGAGATTAGCATCGAGTACATTCCCCACGATGTCTATCGGAAGAGGTACAAGGATCTAGGTTATGGACATGAAAGATTTACGGCCAGATTACAAGTTTGGTGCAAGGTTATTATTATATCTTTGGAGCTCTCTCTTTTCTTCATTAGACTTCATGTAGATTTATCTATCAAGTTGGGATGCAACTTTGTTAAGAAGCTGATCATAGGGAATAATGTTCTTTATATGCAGCTTGTTACCTCAACAAATCAAATGTAA 2961 39.89 MSTHSCSKQYSRRSKKQTQSNSNDESAARTRPLSFEDIMLRRKNKGSAATVEVGATGSHSRRESIDKHSTDNRASERNLRHSKGYSLDVQNLSIEESAKDSSRRKKEETLLKDNMVVRSDRNNYESGLSLMSKLKYDRSGKDKIEKYGQENLGWGKNDQSSRIDIETETGKRHSRDTAGKDRREDHGRGKFERENKRKSQNGDDDRNRDKYIAKRHDHGKHRDLENRERKEAKVSLTSHYEDSRLKRRRKRSRDRESKHRRSVSLSPRPHKHSTKLARQKELPLDSHVKKSGRWRSDSDRTGDFTNTSNSQYRRHSGSTSGLGGYSPRKRRTESAVKTPSPARSPEKKNEVLDVPPTEKVKLFSGSVTSNFQPPNPTVSLGISNDQSGGALFSSAMGKSLSGVSSNNIATKTKVSLDLIQLTQATRPMRRLYIENLPHSASEKAIIDCLNGFLTSSGVNHIEGTQPCISCIIHKDRAQALVEFLTPEDASAALSFDGSDFSGSILKIRRPKDYIEIVTGDLDKSVPVVNEINDVVEDSPNKIIVAGISNRISSEMLRDIVTAFGCLKAYHFEMNDDINEPCAFLEYVDQSVVSKACAGLNGMKIGGEVLKVFPAVPFASTERNGCQPCYGIPEHVKPLLQQPSVVLKVNNVFNADVLPVLSESDIDEVLEDIRFECARFGTVKSMNFVKPCDGCVSAEEEYKKISDVTDVEIKHEIQENSTMVISRNNNDLEDNYANLDNCPNDTNQKQVNSPSNGRHQDEGVEDKFCQMGNDDATCFEFVACENASERIPQGLSDQRSSPENELQNAKVAEIIETDETGSDKKSVCLDSPMVVDDNEKKVLNGLDPMLRTGSDASDKSEKKDPNNNLESLFVLGSVFVEFGRMEASCMAAHSLHGRIYDGQEISIEYIPHDVYRKRYKDLGYGHERFTARLQVWCKVIIISLELSLFFIRLHVDLSIKLGCNFVKKLIIGNNVLYMQLVTSTNQM 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8549445 8558359 - CcPI632755_06g007490.1 Cco06g0749 181349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0749 986 MobiDBLite consensus disorder prediction 740 757 - -
Cco06g0749 986 PANTHER RNA-BINDING PROTEIN 35 919 - GO:0000243(PANTHER)|GO:0008187(PANTHER)|GO:0016607(PANTHER)|GO:0030628(PANTHER)|GO:0071004(PANTHER)|GO:0089701(PANTHER)
Cco06g0749 986 MobiDBLite consensus disorder prediction 1 29 - -
Cco06g0749 986 MobiDBLite consensus disorder prediction 59 83 - -
Cco06g0749 986 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 429 512 IPR000504 GO:0003723(InterPro)
Cco06g0749 986 Gene3D - 429 611 IPR012677 -
Cco06g0749 986 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 540 616 IPR000504 GO:0003723(InterPro)
Cco06g0749 986 SUPERFAMILY RNA-binding domain, RBD 534 620 IPR035979 GO:0003676(InterPro)
Cco06g0749 986 MobiDBLite consensus disorder prediction 301 325 - -
Cco06g0749 986 Gene3D - 803 924 IPR012677 -
Cco06g0749 986 SUPERFAMILY RNA-binding domain, RBD 632 917 IPR035979 GO:0003676(InterPro)
Cco06g0749 986 Gene3D - 530 589 IPR012677 -
Cco06g0749 986 MobiDBLite consensus disorder prediction 161 243 - -
Cco06g0749 986 MobiDBLite consensus disorder prediction 839 863 - -
Cco06g0749 986 MobiDBLite consensus disorder prediction 135 149 - -
Cco06g0749 986 MobiDBLite consensus disorder prediction 276 300 - -
Cco06g0749 986 SUPERFAMILY RNA-binding domain, RBD 412 512 IPR035979 GO:0003676(InterPro)
Cco06g0749 986 Gene3D - 640 731 IPR012677 -
Cco06g0749 986 SMART rrm1_1 541 612 IPR000504 GO:0003723(InterPro)
Cco06g0749 986 SMART rrm1_1 430 508 IPR000504 GO:0003723(InterPro)
Cco06g0749 986 MobiDBLite consensus disorder prediction 740 761 - -
Cco06g0749 986 MobiDBLite consensus disorder prediction 1 355 - -
Cco06g0749 986 MobiDBLite consensus disorder prediction 97 119 - -
Cco06g0749 986 FunFam Splicing factor U2af large subunit A 429 531 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0749 K12837 - - csv:101213128 1248.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0749 Cco-Chr6:8549445 Cco08g0515 Cco-Chr8:13366905 2.30E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g750 Blo01g00297 . . . . . . Bma05g01247 Cmo08g01045 Cmo17g00150 . . . . . . . . . . . . . . Cla06g00680 Cam06g0733 Cec06g0740 Cco06g0749 Clacu06g0725 Cmu06g0709 Cre06g1483 . . . . . Csa02g01043 Chy05g00306 . . . . . Bpe05g01101 . . . Sed04g2009 . . Cma08g01072 Cma17g00150 Car08g00945 Car17g00132 Cpe12g00127 Cpe17g00206 Bhi12g01590 Tan06g2386 Cmetu05g1606 . . . Lcy13g0392 . . . . . . . Lsi09g01218 . . Cme05g00588
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008034 0 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 2 1 1 2 1 1 1 1 35