Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0757 ATGGACTCGGATCAGGGGAAGCTTTTTATTGGTGGGATTTCATGGGAGACCTCCGAGGATAAGCTAAAGGACTACTTTAGCAACTATGGTGAAGTTATGCATACGGTCGTTATGAGGGATAAGATCACTAGCAGACCTAGAGGCTTTGGCTTTGTTGTCTTTGCAGATCCCTCTGTTCTCGATCGAGTTCTCCAGGATAAGCACACTATCGATGGTAAAACGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACCCCTGCCAGAGCAATCAATTCTAATGCTACTAGAAACTCTGGCGGCGGTGGTGGTGGAAACATGAGAACCAAAAAAATTTTTGTTGGGGGATTGCCTCCAACATTGACTGAAGAAGGATTTAAAGAGTACTTTGAGGCTTATGGCCATGTAACTGATGTAGTAGTCATGTATGATCAAAATACTAGGCGTCCGCGAGGATTTGGATTTATATCTTTTGATACTGAAGAAGCTGTTGACAGAGTTTTGCACAAGACATTTCATGATTTGAATGGTAAACAAGTAGAAGTTAAGCGTGCCCTTCCCAAAGATGCCAATCCAGGTGCAGGTGGCCGTTCAATGGGTGGTGGTGCTGGTAGTGGTGGTTATCAAAGTTATGGGTCATCTGGTGGTGTCAATTCAAATTCTTATGATAATCGTATGGATTCCAATAGGTATATGCAATCTCAGGGCTCTAGTGGAGGTTTCCCACCTTATGGTTCCTCTGGATATAATAATCCTGGGTATGGGTATGGTTCATCAAACAATGGTATGGGATATGGTGGTTATGGAAATTACAGTGGTTCAAATACTGGGTATGGTGCCCCTGCAGCAGTAGCCTATGGTAACCCAAATGTCGCCAATGCTGCTTACGGGAGTGGTCCTCAAGGTGGACCAAGAAGTTCATGGTCAGGTCAAGCTCCCTCTGGGTATGGAGCCATGGGTTATGGGAATGCAGCTCCTTGGGGTGGTGCTCCCGGGGGCAATGCTGGAGCTGGCAGTGGAGGACCTGGATCTGCACCCACGGGTCATTCTCCTGGTGGAGCTGCTGCTGGGTATGGCAATCAGGGTTATGGATATGGTGGGTTTGGGAATCAAGGTTATGGTTATGGTGGAGGTGATGGCTCGTACGGAAGTCAATCTGGTTATGGTACAACCGGAGGACGATCTGGTAGTGCCTCAAATAGCAATGTTGGGGGTGGTCCAAGTGGGGGAGAATTACAGGGCAACAATGCTTACATGGGTAATGGCTATGGGGATGCTAATGGAAACGCTGGTTATGGAAATGCTGCATGGAGATCTGATGGAGGACAAGTAGGTTATACGGGTGGTTATGCTGGTGGACAAGCTCGACAAGCCCAACAACAGTAA 1392 47.49 MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAINSNATRNSGGGGGGNMRTKKIFVGGLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGAGGRSMGGGAGSGGYQSYGSSGGVNSNSYDNRMDSNRYMQSQGSSGGFPPYGSSGYNNPGYGYGSSNNGMGYGGYGNYSGSNTGYGAPAAVAYGNPNVANAAYGSGPQGGPRSSWSGQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAAGYGNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTTGGRSGSASNSNVGGGPSGGELQGNNAYMGNGYGDANGNAGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8724231 8726384 - CcPI632755_06g007570.1 Cco06g0757 181357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0757 463 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676(InterPro)
Cco06g0757 463 MobiDBLite consensus disorder prediction 385 411 - -
Cco06g0757 463 Gene3D - 4 85 IPR012677 -
Cco06g0757 463 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676(InterPro)
Cco06g0757 463 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Cco06g0757 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723(InterPro)
Cco06g0757 463 CDD RRM2_Hrp1p 113 190 - -
Cco06g0757 463 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Cco06g0757 463 MobiDBLite consensus disorder prediction 79 111 - -
Cco06g0757 463 SMART rrm1_1 7 78 IPR000504 GO:0003723(InterPro)
Cco06g0757 463 SMART rrm1_1 113 185 IPR000504 GO:0003723(InterPro)
Cco06g0757 463 Gene3D - 86 208 IPR012677 -
Cco06g0757 463 Pfam RNA recognition motif 114 172 IPR000504 GO:0003723(InterPro)
Cco06g0757 463 Pfam RNA recognition motif 8 75 IPR000504 GO:0003723(InterPro)
Cco06g0757 463 MobiDBLite consensus disorder prediction 186 246 - -
Cco06g0757 463 MobiDBLite consensus disorder prediction 383 422 - -
Cco06g0757 463 FunFam heterogeneous nuclear ribonucleoprotein 1 107 227 - -
Cco06g0757 463 MobiDBLite consensus disorder prediction 209 246 - -
Cco06g0757 463 MobiDBLite consensus disorder prediction 87 105 - -
Cco06g0757 463 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 461 IPR053260 -
Cco06g0757 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0757 K14411 - - csv:101207768 532.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0757 Cco-Chr6:8724231 Cco10g0445 Cco-Chr10:5252259 8.50E-67 dispersed
Cco04g2348 Cco-Chr4:36943206 Cco06g0757 Cco-Chr6:8724231 3.30E-07 transposed
Cco05g2922 Cco-Chr5:36737850 Cco06g0757 Cco-Chr6:8724231 5.40E-28 transposed
Cco06g0757 Cco-Chr6:8724231 Cco07g0127 Cco-Chr7:1350858 5.70E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g762 Blo01g00299 Blo12g00140 Bda03g01091 . Bpe04g00987 . Bma04g01016 Bma05g01250 Cmo08g01037 Cmo17g00147 . . . . . . . . . . . . . . Cla06g00688 Cam06g0739 Cec06g0746 Cco06g0757 Clacu06g0730 Cmu06g0714 Cre06g1489 . . Cone7ag0342 Cone4ag0355 . Csa02g01037 Chy05g00300 . . . . . Bpe05g01104 . . . Sed09g0643 . . Cma08g01068 Cma17g00148 Car08g00943 Car17g00130 Cpe12g00125 Cpe17g00209 Bhi12g01574 Tan06g2380 Cmetu05g0543 Lac12g2130 Hepe03g0304 . Lcy13g0400 . . . . . . . Lsi09g01204 . . Cme05g00604
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001187 1 2 4 4 3 1 4 1 3 2 1 2 4 2 2 4 2 6 3 1 2 2 2 2 2 2 2 4 4 2 76