Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0761 ATGGCCGGTGAGGTAGCGGTGGAGGGTGCTGTGGCGGCAGCCGCGGTGGCGCCAGAACTAGCCGATTCCAGTCAGCAGTCCCATAAATTGGAGAGAAAATGGACCTTTTGGTTTGATAACCAGTCCAGGCCGAAGCAAGGTGCTGCTTGGGGCACTTCTCTCCGCAAGGTTTATACCTTTGACACCGTCGAAGAATTCTGGTGTTTGTACGATCAGCTATTCAAGCCGAGCAAGTTGCCGGCTAATGCAGATTTTCACCTGTTCAAATCTGGAGTTGAACCGAAATGGGAAGATCCTGAGTGCGCTAATGGAGGAAAATGGACTGTCACGAGCAGTAGAAAGGCTAACCTCGACAACATGTGGTTGGAAACGTTGATGGCTTTGATTGGGGAACAATTTGAGGAGTCTGATGAGATCTGTGGCGTAGTTGCCAGTGTGCGTCAGAGGCAGGACAAACTTGCCCTGTGGACCAAGACAGCAACAAATGAGGCTGCTCAGATGAGCATTGGTAGAAAATGGAAGGACATTATTGACGTGACCGACAAGATTTCCTTCAGCTTTCATGAGGACTTGAGAAGGGAGAAGTCAGCAAAAGCTCGATACAGTGTTTGA 612 49.67 MAGEVAVEGAVAAAAVAPELADSSQQSHKLERKWTFWFDNQSRPKQGAAWGTSLRKVYTFDTVEEFWCLYDQLFKPSKLPANADFHLFKSGVEPKWEDPECANGGKWTVTSSRKANLDNMWLETLMALIGEQFEESDEICGVVASVRQRQDKLALWTKTATNEAAQMSIGRKWKDIIDVTDKISFSFHEDLRREKSAKARYSV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8741529 8743783 - CcPI632755_06g007610.1 Cco06g0761 181361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0761 203 ProSitePatterns Eukaryotic initiation factor 4E signature. 84 107 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Cco06g0761 203 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 21 195 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Cco06g0761 203 FunFam Eukaryotic translation initiation factor 4E 19 203 - -
Cco06g0761 203 Pfam Eukaryotic initiation factor 4E 29 185 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Cco06g0761 203 SUPERFAMILY eIF4e-like 22 196 IPR023398 -
Cco06g0761 203 Gene3D RNA Cap, Translation Initiation Factor Eif4e 19 203 IPR023398 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0726 Cco-Chr3:7477339 Cco06g0761 Cco-Chr6:8741529 6.10E-59 dispersed
Cco06g0761 Cco-Chr6:8741529 Cco10g1328 Cco-Chr10:26223206 4.20E-26 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0761 K03259 - csv:101208495 383.259