Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0770 ATGGAATGTACTTTGGGCCTTTTCTGCCCTTCTGCTGCTGCTGGGTCTGTTTCTGGGTCCGCCATTAACGACCCCAATCCCTCCACAATCGACATTCTTCAGAAAGATTTTGTGGGTAAGACTCCCATTCAGTCCTCTCCCTCTCCTGCTTCCTCTGACCTCGAATTGGGCCTTGGTTTAGCCCTTGGCCGCGGTGGCGGTGGCGGGAAGGTTAATGGTGGTACTTGGAGTGAGCGTGGTCGGATTTTGACTGCTCAGGATTTTCCTGTTCATGGTGGCTCTTCTTCTACGTCTTCTTCTTCCTCTTCCTCTTCTCGTTTCCATGGAAGAGAGGCTAATGGTTCTGTTGCTGTTTCTGGAACTAAACGAGCTGCTGACTCTGCTCCTAATGAAGGAGGATCATCCCCCACTGCTCTCAATCAAGTTGTGGGATGGCCACCCATTAGGACATACAGGATGAACAGCTTGGTCAACCAAGCTAAGACAGCCAGGGCTGAGGAAGATGATGTTGTCTGTGAGGAGAAGAAAGATCAGTCTAAGGACACTTTGAAGAACAAAACATGTGATTTTGATGGAAAAGGGCACTTGGGATTTGTCAAAGTGAATGTGGATGGGGTTGTGATAGGGAGGAAGGTGGATCTCAATGCCCATTCTTGCTATGAGACCTTGGCCCTGATGCTGGAGGACATGTTTTTCAGGTCTGGAGGAGGCTCCATTCCCAATGGGCAAAGTGGAGACAAAGAACAAGCAAGGAAGTTGTCTAAGCTTTTGGATGGATCCTCTGAGTTTGTGCTCACATATGAAGATAGAGAGGGAGATTGGATGCTAGTTGGAGATGTCCCTTGGGGGATGTTCGTGTGCTCTGTTCGACGACTTCGCATAATGAGGACATCTGAAGCCAAAGGACTAGCACCAAGATCTCAAGACAAGCAAGTGAAACAAAGGAGCAAGCCTATCTGA 960 48.75 MECTLGLFCPSAAAGSVSGSAINDPNPSTIDILQKDFVGKTPIQSSPSPASSDLELGLGLALGRGGGGGKVNGGTWSERGRILTAQDFPVHGGSSSTSSSSSSSSRFHGREANGSVAVSGTKRAADSAPNEGGSSPTALNQVVGWPPIRTYRMNSLVNQAKTARAEEDDVVCEEKKDQSKDTLKNKTCDFDGKGHLGFVKVNVDGVVIGRKVDLNAHSCYETLALMLEDMFFRSGGGSIPNGQSGDKEQARKLSKLLDGSSEFVLTYEDREGDWMLVGDVPWGMFVCSVRRLRIMRTSEAKGLAPRSQDKQVKQRSKPI 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8841941 8843850 + CcPI632755_06g007700.1 Cco06g0770 181370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0770 319 Gene3D - 192 309 - -
Cco06g0770 319 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 53 301 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
Cco06g0770 319 MobiDBLite consensus disorder prediction 89 110 - -
Cco06g0770 319 MobiDBLite consensus disorder prediction 86 141 - -
Cco06g0770 319 ProSiteProfiles PB1 domain profile. 196 299 IPR053793 -
Cco06g0770 319 MobiDBLite consensus disorder prediction 300 319 - -
Cco06g0770 319 FunFam Auxin-responsive protein 191 307 - -
Cco06g0770 319 Pfam AUX/IAA family 118 306 IPR033389 -
Cco06g0770 319 SUPERFAMILY CAD & PB1 domains 198 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0770 K14484 - - csv:101215306 493.426
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0770 Cco-Chr6:8841941 Cco08g1345 Cco-Chr8:25343826 3.00E-31 dispersed
Cco05g2509 Cco-Chr5:33455041 Cco06g0770 Cco-Chr6:8841941 2.80E-18 transposed
Cco05g0447 Cco-Chr5:3651207 Cco06g0770 Cco-Chr6:8841941 8.30E-69 wgd
Cco06g0770 Cco-Chr6:8841941 Cco07g0136 Cco-Chr7:1424018 4.00E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g788 Blo01g00304 . . Bda08g00002 . Bpe14g01286 . Bma05g01256 . Cmo17g00135 . Cma14g01847 . Car14g01655 . . Cpe03g01547 . . . . . . . Cla06g00701 Cam06g0752 Cec06g0758 Cco06g0770 Clacu06g0743 Cmu06g0726 Cre06g1503 Cone14ag0184 Cone15ag0193 . . Lsi05g01777 Csa02g01024 Chy05g00286 Cme06g00445 . . . Bda13g00034 . . Bma02g00747 . . . Cmo14g01891 . Cma17g00132 . Car17g00118 Cpe12g00116 . . . . . . . . Cla05g00403 Cam05g0439 Cec05g0447 Cco05g0447 Clacu05g0436 Cmu05g0415 Cre05g0477 Lsi09g01192 Csa03g01162 Chy06g00425 Cme05g00622
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002822 3 4 0 2 1 1 2 2 2 2 1 2 1 2 2 2 1 2 2 1 2 2 2 2 2 1 2 3 3 2 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59486 PF02309 AUX_IAA 2.10E-62 CL0072 Cco TR