Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0774 ATGAAGAAATATCAAAGGCCCAACGATTTCACATTGTTAGAAATCGTCCCAAGCTCATATTTGCAGAAATATCAAAGGCTCAACGATTTCACAAACATCAGTATGTATTATGCTGGCGTATATCTTGTGACAGATTCCTCGTCTGCATTGTCATCAAGCCCTGGAAATTGTGTCCTTAACCATTTTCGACCAAAGTCCAAAAGGAGGTTGAAGATGACTCTGCTAGTTACTGAAGCCGAAGTTGCTTCGTCTTCCCAAATGAAGGTGAAGAAGAAAAAGCAGAAGACTGCTGCAGCTTCTAATTCAGGCGTAGATCTGAAGTCCATCATCCATAACCATGCATTGTTCTTTGACAAGTTAGTGGAGCTTATTCCGGTAAGGTTCTATTTACGTAGTGATGAAAAAGGAAAACCTTGGTTTCAGGGCCTCAGCAAGAATGAAAAGGCTATGGCTAAGAAGGAATCAAAGGAAAACCTTAAGAAAGTACGAAGAGATCGTATGGATCCAGAAAAGTCGTCTAAATCAACAGTTGATTTGCTTAAAGAAAGCTTGGAAAATGAAAAGCTGAAAAATGGTAGTCACGATGATGAAGAGGATGTTAAGCCAGTGGCATCTGGGTCTAATGATGATGATCAGTCAGTGACATATGAAGAACTAAGACAACGCCTTCATCGAAAAATTGAAGAGTTCCGGGTGAACAGAAATACAGGATGTTCAAATAGGGAAAAAAAGAGAAATGAAAGGAACGAGAGAAGGGAAGTTATCCAGAAGAAACGCAAGAGAGAAAGTGACCCTGACCAGAAAAAATCAGCCACCACCCTTTCCAAAGTCGAAATGGAGAGGAATGTTGTTGAGGCCTCCAAAGAGCTTGCGTTTGGTCATGTTAAACTAGGAACTGAAGAAGAGCATGGTAAGAATAAGAAGAGAAAACTCTCCAAGTTGAAGGAACTTGAAAAGGCAAAAAAGTTGGAGGAAGCAAAGAAAGATCCCGAAAAGGGCGAGATCATATTGAAGAAGCATTCTTGGAACGCAGCTACAAGTAGAGCTGCTGGGGTTAAAGTTCATGATGATCCACAGCGTCTGATGAAGAGTTTACGGAAGGAAAAGAAACAGCAACTTAAGAATGTTGAGAAATGGAAAGACAGGATTGAAACCACCCAGAAGATGAAAGCAGAAAGACAACAAAAGAGATCAGAAAACATAGCTCAGAAAATCCATGACAAGAAGATGAAACGGATTGCAAAGAGGGAGAAGAAACTAATGCGACCTGGGTTCGAAGGTCGCAAGGAAGGTTTCATTAACGAAAGCACTGGATGA 1317 40.77 MKKYQRPNDFTLLEIVPSSYLQKYQRLNDFTNISMYYAGVYLVTDSSSALSSSPGNCVLNHFRPKSKRRLKMTLLVTEAEVASSSQMKVKKKKQKTAAASNSGVDLKSIIHNHALFFDKLVELIPVRFYLRSDEKGKPWFQGLSKNEKAMAKKESKENLKKVRRDRMDPEKSSKSTVDLLKESLENEKLKNGSHDDEEDVKPVASGSNDDDQSVTYEELRQRLHRKIEEFRVNRNTGCSNREKKRNERNERREVIQKKRKRESDPDQKKSATTLSKVEMERNVVEASKELAFGHVKLGTEEEHGKNKKRKLSKLKELEKAKKLEEAKKDPEKGEIILKKHSWNAATSRAAGVKVHDDPQRLMKSLRKEKKQQLKNVEKWKDRIETTQKMKAERQQKRSENIAQKIHDKKMKRIAKREKKLMRPGFEGRKEGFINESTG 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8863980 8867867 - CcPI632755_06g007740.1 Cco06g0774 181374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0774 438 Pfam Surfeit locus protein 6 240 412 IPR029190 -
Cco06g0774 438 Pfam 60S ribosome biogenesis protein Rrp14 110 170 IPR029188 -
Cco06g0774 438 MobiDBLite consensus disorder prediction 237 279 - -
Cco06g0774 438 Coils Coil 362 389 - -
Cco06g0774 438 MobiDBLite consensus disorder prediction 147 214 - -
Cco06g0774 438 Coils Coil 307 327 - -
Cco06g0774 438 PANTHER SURFEIT LOCUS PROTEIN 6 107 435 IPR007019 GO:0003677(PANTHER)|GO:0003723(PANTHER)|GO:0005730(PANTHER)|GO:0042273(PANTHER)|GO:0042274(PANTHER)
Cco06g0774 438 MobiDBLite consensus disorder prediction 147 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0774 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0774 Cco-Chr6:8863980 Cco06g2002 Cco-Chr6:30112417 1.40E-132 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g802 Blo01g00305 . . Bda08g00009 Bpe04g00978 . Bma04g01025 Bma05g01260 . Cmo17g00131 . . . . . . . . . . . . . . Cla06g00706 Cam06g0756 Cec06g0762 Cco06g0774 Clacu06g0747 Cmu06g0730 Cre06g1507 Cone14ag0191 Cone15ag0201 . . . Csa02g01018 Chy05g00282 . . . . . Bpe05g01114 . . . . . . . Cma17g00129 . Car17g00115 Cpe12g00113 . . . . . . . . . . . . . . . Lsi09g01186 . . Cme05g00627
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002685 1 3 0 3 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 2 2 1 1 2 2 2 2 1 7 1 58