Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0776 ATGGAAATACATATCGAAGCAAAGAGAACTGATTTACCACATAGTGTCCTCTGCAAGATTAAAAATGGTGCTTCTACTGCATTTTGGGCCGACCCATGGTATGGTAACAGCCCCCTATGTCAGACTTTCCCAAAATTGTATGCTATTGCCAATTTCAAGGACGTATCCATCGCCCAGAAAGAAATCAGGGATGTCGTTGAAAAGGATGCAGTTGATGAAACTGAATATTATGCATGGAATGAGTTGAGACTCCATCCTTTGCTTATGAAATCGATCTACAAACTTGGGTTTAAGGAACCTACAGCAATCCAGAAAGCTTGTATTCCAGCTGCTGCTTACCAGGGGAAGGATGTTGTTGGTGCTGCTGAGACAGGATCTGGAAAAACACTAGCTTTTGGATTGCCAATCCTACAACGTTTCTTGGATGAACGAGAGAAATCTGGAAAGATGTCTGAAGAAAAAGGAGTAGATGCAAAAAGATATGCTCCCAGAAGTCTTCTACGGGCTCTAATTATTACTCCTACCAGAGAACTTGCTCTTCAGGTTACTGATCATCTCAAGGCAGTCGCAGTAGGTACAGATATCAGGGTGGTTCCAATCGTTGGTGGGATGTCCACTGAAAAGCAGGAAAGGCTTTTAAGGATGAGGCCAGAGGTTGTAGTTGGAACTCCAGGACGGTTGTGGGAACTTATGTCAGGAGGAGAGAAGCATCTTGTTGAGTTGCAGACATTGTCTTTCTTTGTGCTGGATGAGGCTGATAGGATGATAGAAAATGGCCACTTTCGTGAGTTGCAGTCCATAATTGATATGCTTCCTGTGACGAATGGTTCTGCAGAAAATTTACAAAATGCAGAAAACTCGTTGACCTCTGCAAGTTCTCATAGAAAGAAAAGACAAACACTTGTGTTTTCTGCTACATTGTCACTATCTTCTGATTTCCGTAAGAAACTAAAGCGTGGATCATCAAGACCTAATCAATCGGGGATAGATGGTTTGAATTCTATAGAGGCTCTATCTGAGAGAGCTGGGATAAGACCTAATGTTGCTATTATAAATCTGACAAACACGTCGGTCTTGGCAAATAATCTTGAAGAATCATTTATAGAATGCAGGGAAGAAGACAAAGATGCTTATTTGTATTACATTCTATCTGTTTATGGACAAGGCCGCACTATTGTGTTCTGTACATCCATTGCTGCATTACGGCATATTGCTGCTTTATTATCCATTGTTGGTGTTAATGTCTTGACTCTTCATGCTCAAAGGCAGCAACGAGCACGCTTGAAGGCAATTGATCGTTTCCGTGGAAGTCAAAATGGGATACTGATTGCCACTGATGTTGCGGCTAGAGGCCTTGATATTCCTGGTGTTCGAACTGTTGTCCACTATCAACTACCACATTCAGCTGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCTGATGGATGCAGTATTGCGTTGGTCTCAGCCAATGAAACTTCCAAATTTGCATCTCTATGCAAATCATTTTCTAAGGAAAGCTTCCAGCGATTTCCTGTTGATAATTCATACATGCCAGAGGTTCTAAAACGTTTGTCTCTTGCACGCCAGATTGACAAGATTCTGCGGAAGCATTCCCAGGAGAAGGCAAGTAAAACCTGGTTTGAGCGGAATGCGGAGTTGGTGGAATTAGTTGTGGACAATGATGACAGTGAAGAGGAGAGAGTAAACAATTATAAGCAGAAGAAAGCTGGCTCCATTCAGTTAAAGAAATTGCAGCAGGAACTTGACAAGCTGCTTTCCCACCCTCTGCAACCAAAATCATTTTCACATCGATATTTGGCTGGTGCTGGGGTTTCACCTCTTCTGCAACATCAATTTGAAGAACTGGCCAAGCAGGATAATGCATCTGTTCAGAATATGGGAGATAACAAAAGGAGGAAGTTGGCTGCTTTCGGTCAAGATCTTACAGAACCACTTCAAGCACTTCGAACTGGTGGTCAACAGGTACATATGGATGCAAAAGAGATGGCTGAAAAACGAAGGAAAATGGAGAACCTTAGGAGAAAGAGAAAAGAGGAGAAAAAACGCTTGCGTGATCAGCGGAGAAATAAACGGAAACAAATGAAAGGCAAGATTTAG 2133 42.24 MEIHIEAKRTDLPHSVLCKIKNGASTAFWADPWYGNSPLCQTFPKLYAIANFKDVSIAQKEIRDVVEKDAVDETEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQRFLDEREKSGKMSEEKGVDAKRYAPRSLLRALIITPTRELALQVTDHLKAVAVGTDIRVVPIVGGMSTEKQERLLRMRPEVVVGTPGRLWELMSGGEKHLVELQTLSFFVLDEADRMIENGHFRELQSIIDMLPVTNGSAENLQNAENSLTSASSHRKKRQTLVFSATLSLSSDFRKKLKRGSSRPNQSGIDGLNSIEALSERAGIRPNVAIINLTNTSVLANNLEESFIECREEDKDAYLYYILSVYGQGRTIVFCTSIAALRHIAALLSIVGVNVLTLHAQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALVSANETSKFASLCKSFSKESFQRFPVDNSYMPEVLKRLSLARQIDKILRKHSQEKASKTWFERNAELVELVVDNDDSEEERVNNYKQKKAGSIQLKKLQQELDKLLSHPLQPKSFSHRYLAGAGVSPLLQHQFEELAKQDNASVQNMGDNKRRKLAAFGQDLTEPLQALRTGGQQVHMDAKEMAEKRRKMENLRRKRKEEKKRLRDQRRNKRKQMKGKI 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8885404 8893073 - CcPI632755_06g007760.1 Cco06g0776 181376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0776 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 498 IPR027417 -
Cco06g0776 710 Coils Coil 667 705 - -
Cco06g0776 710 CDD DEADc_DDX24 88 351 - -
Cco06g0776 710 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 248 256 IPR000629 -
Cco06g0776 710 MobiDBLite consensus disorder prediction 665 710 - -
Cco06g0776 710 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 530 IPR001650 -
Cco06g0776 710 Pfam DEAD/DEAH box helicase 101 308 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cco06g0776 710 Gene3D - 352 597 IPR027417 -
Cco06g0776 710 Pfam Helicase conserved C-terminal domain 375 482 IPR001650 -
Cco06g0776 710 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 325 IPR014001 -
Cco06g0776 710 SMART ultradead3 96 338 IPR014001 -
Cco06g0776 710 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 105 IPR014014 GO:0003724(InterPro)
Cco06g0776 710 CDD SF2_C_DEAD 363 492 - -
Cco06g0776 710 Gene3D - 48 326 IPR027417 -
Cco06g0776 710 SMART helicmild6 402 483 IPR001650 -
Cco06g0776 710 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 71 708 IPR050079 -
Cco06g0776 710 MobiDBLite consensus disorder prediction 681 710 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0776 K14805 - - csv:101209958 1176.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0776 Cco-Chr6:8885404 Cco09g1056 Cco-Chr9:10077002 1.10E-52 dispersed
Cco06g0776 Cco-Chr6:8885404 Cco10g0356 Cco-Chr10:4117751 1.70E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31