Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0789 ATGCGAGACCCACATGGAAATAATCCCACTCTGTTTCTCTTGGACAGAGAGACTTTCTTGCTCTGTTTTGAGTTTTCAACAATGGCGGCTACAGATTGCTCCCTGACTCTAGCTCAGCTCCTCGGCCCCAATGTCACCAACTCCGGCGCCGCCGCCTCCTTCATTTGCGACCAATTCTCCACCTCCACCAACAACTTTTCCGACACTAAATTCGCCGTCGACACCGTTTACCTCCTCTTCTCTGCCTACCTCGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGTGCCGGCTCCGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAATGTCCTCGACGCTGCTGCCGGCGGCCTTTTCTACTACCTCTTCGGCTTCGCCTTCGCCTTTGGCACCCCTTCCAACCCCTTCATCGGCCGCCATTTCTTTGGCCTCAAGTCAATCCCTTCCACCGCCGCCGATTACAGCTTCTTTCTCTATCAATGGGCTTTCGCCATCGCTGCCGCCGGTATCACCAGCGGCTCAATTGCCGAGCGAACCCAATTTGTTGCCTATTTGATCTACTCCTCCGTTTTGACCGGTTTCGTTTACCCGGTCGTGTCCCATTGGTTCTGGTCTCCAGACGGTTGGGCCAGCCCGTCACGGTCCAACGGGGACCTCTTGTTTGGAACTGGAGTCATAGATTTCGCCGGTTCCGGCGTGGTTCACATGGTCGGTGGAATCGCTGGACTTTGGGGAGCTTTAATAGAAGGACCACGAATCGGCCGGTTCGACAGAAGCGGCAGATCCGTTGCTCTACGAGGCCATAGCGCTACGTTAGTTGTTCTCGGTACCTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCCTTCACTAAAATCTTAGTTCCGTATGGTTCGAATAATTACTACGGACAGTGGAGTGCCGTCGGTCGAACCGCCGTGACGACGACACTAGCCGGTTGCACGGCTGCGCTAACAACGCTTTTCGGAAAACGAATTCTATCCGGCCACTGGAACGTTACCGACGTCTGCAATGGCTTACTTGGTGGCTTTGCCGCCATAACCTCTGGCTGCTCAGTGGTGGAGCCGTGGGCCGCTGTGATATGTGGGTTTGTGGCGGCGGTGGTTTTAATCAGCTGTAACAAACTGGCAGAGAAGGTGAAATTTGACGACCCATTGGAGGCGGCACAACTGCACGGCGGTTGCGGGGCGTGGGGGATAATTTTCACGGCGTTGTTCGCGACGAAGAAGTATGTGAACGAGGTGTACGGCGGAGATATGGGAAGGCCACACGGGCTGTTTATGGGCGGCGGAGGGAAGTTGTTGGGTGCGCATTTGATACAAATTTTGGTGATTGTTGGGTGGGTTAGCGTTACAATGGGGCCGTTGTTTTTTGGGCTACATAAGCTGAAGCTATTAAGAATCTCGCCGGAGGATGAGATGGCCGGAATGGATATGACCAGACACGGTGGATTTGCTTACGTCTACCATGATGAAGATGAATCTCCGACCAATGGAGTTCAAATGAGTAAGATTAAGCCAAGAGAAACAAGTCCAATTGGAAATTAA 1584 53.35 MRDPHGNNPTLFLLDRETFLLCFEFSTMAATDCSLTLAQLLGPNVTNSGAAASFICDQFSTSTNNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNPFIGRHFFGLKSIPSTAADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRSNGDLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSATLVVLGTFMLWFGWYGFNPGSFTKILVPYGSNNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAAVVLISCNKLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFATKKYVNEVYGGDMGRPHGLFMGGGGKLLGAHLIQILVIVGWVSVTMGPLFFGLHKLKLLRISPEDEMAGMDMTRHGGFAYVYHDEDESPTNGVQMSKIKPRETSPIGN 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9122317 9123900 - CcPI632755_06g007890.1 Cco06g0789 181389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0789 527 PANTHER AMMONIUM TRANSPORTER 48 507 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cco06g0789 527 MobiDBLite consensus disorder prediction 505 527 - -
Cco06g0789 527 SUPERFAMILY Ammonium transporter 73 480 - -
Cco06g0789 527 FunFam Ammonium transporter 55 514 - -
Cco06g0789 527 Pfam Ammonium Transporter Family 77 499 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco06g0789 527 Gene3D Ammonium transporter AmtB like domains 53 518 IPR029020 -
Cco06g0789 527 NCBIfam ammonium transporter 74 499 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco06g0789 527 ProSitePatterns Ammonium transporters signature. 230 255 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0437 Cco-Chr5:3576277 Cco06g0789 Cco-Chr6:9122317 3.30E-240 dispersed
Cco06g0789 Cco-Chr6:9122317 Cco11g1037 Cco-Chr11:19422051 1.60E-207 dispersed
Cco06g0789 Cco-Chr6:9122317 Cco07g0145 Cco-Chr7:1488972 1.40E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0789 K03320 - csv:101212168 950.273