Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0804 | ATGTTTGAGTTTGAGGATGAAGAACGAACCCCCCGCCATAACGTATTCCTCATTTTCCTCCATAACTTTCGTATTTTGCGATTCCTAATTTACCCTTCTCCTTCATCCAATATTCTCGCTTACTTCTTGGTTTTCTCTCGCATCAATGTCCTCTTAATTGGGGAATTGTGGAAAGATTTTCTTGCTGACTGGTGGAGAAGAATCAAGGAAGAGGGCTTTCCGGTTTTCCAAGACAAATCTATTTATAAAGTTTGTTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGCAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACCGCCAGCAATTGAAGTGTCTTCAAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACTTCCTTGGAAAAGCTCCACTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCTTCTACGGCCACCAATGCATCTTTTGTGCTGAGGAAGTACTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCACTAATTTCTGATTCTTCTCCATGCCCAAGTGCAGCGACAATTCCTATGCAAGGGATGACCTCTATGTTGCCGCCATCAGATAATCAGGCAGTGTCCCAGCAACCACGGATTACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCAGCAGGAGGGTTTCCAGTGATTGGAGTCATTGACGGAAAATTTGATAGTGGATATCTTGTTACTGTTACTGTTGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTTCTCAGCAGCAAGTTTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTGCTACCTCCACCGCACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATTAAGAGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAACCAGACCTGAATATGGTCTATGCTGACAAAAATGAAGAAACCGAGGGCGGTGAGTCTCCTCAAACACCAGATAATGATACAAGCTATGTGGAAGGCGACTCCGGAGAGTATAAAACGGAAGAGAAGGAGGAGGAAGAAGAAGAAGAAGATGAGGAGGAGGACTCGCAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTTAACGTTTTGGTTGAGGAGGAACAGTGTGAGACGAGAACAGCCGAAGAGGATGTTAGAAAAGATAGTAGCACGGTCGGTGACGATAAAGAAGTTTACGCCGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGACAGAACCCGAACCAACAACAGCCATTAGAGAAGATTAA | 1761 | 44.86 | MFEFEDEERTPRHNVFLIFLHNFRILRFLIYPSPSSNILAYFLVFSRINVLLIGELWKDFLADWWRRIKEEGFPVFQDKSIYKVCWLMIEEERTEAGWGSRKELTMASTSFAGGKQPPAIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPLISDSSPCPSAATIPMQGMTSMLPPSDNQAVSQQPRITELPAVSPSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPSQQQVLQPVGAFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPDNDTSYVEGDSGEYKTEEKEEEEEEEDEEEDSQEDASPQGIGNVDVNVLVEEEQCETRTAEEDVRKDSSTVGDDKEVYAGDSVMVEVEAKTEPEPTTAIRED | 586 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9430549 | 9438552 | - | CcPI632755_06g008040.1 | Cco06g0804 | 181404 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0804 | 586 | MobiDBLite | consensus disorder prediction | 353 | 367 | - | - | |
Cco06g0804 | 586 | Gene3D | High mobility group box domain | 357 | 452 | IPR036910 | - | |
Cco06g0804 | 586 | CDD | HMG-box_AtHMGB9-like | 373 | 439 | - | - | |
Cco06g0804 | 586 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 373 | 440 | IPR009071 | - | |
Cco06g0804 | 586 | MobiDBLite | consensus disorder prediction | 471 | 586 | - | - | |
Cco06g0804 | 586 | MobiDBLite | consensus disorder prediction | 344 | 380 | - | - | |
Cco06g0804 | 586 | SMART | bright_3 | 141 | 232 | IPR001606 | GO:0003677(InterPro) | |
Cco06g0804 | 586 | FunFam | High mobility group B protein 15 | 134 | 246 | - | - | |
Cco06g0804 | 586 | FunFam | High mobility group B protein 15 | 355 | 450 | - | - | |
Cco06g0804 | 586 | SUPERFAMILY | HMG-box | 366 | 445 | IPR036910 | - | |
Cco06g0804 | 586 | SMART | ARID_2 | 137 | 227 | - | - | |
Cco06g0804 | 586 | Coils | Coil | 422 | 442 | - | - | |
Cco06g0804 | 586 | Coils | Coil | 495 | 520 | - | - | |
Cco06g0804 | 586 | CDD | ARID_HMGB9-like | 142 | 227 | IPR045303 | GO:0003677(InterPro) | |
Cco06g0804 | 586 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 117 | 489 | - | - | |
Cco06g0804 | 586 | MobiDBLite | consensus disorder prediction | 535 | 558 | - | - | |
Cco06g0804 | 586 | Pfam | ARID/BRIGHT DNA binding domain | 143 | 227 | IPR001606 | GO:0003677(InterPro) | |
Cco06g0804 | 586 | SUPERFAMILY | ARID-like | 137 | 243 | IPR036431 | GO:0003677(InterPro) | |
Cco06g0804 | 586 | Pfam | HMG (high mobility group) box | 373 | 440 | IPR009071 | - | |
Cco06g0804 | 586 | MobiDBLite | consensus disorder prediction | 499 | 519 | - | - | |
Cco06g0804 | 586 | ProSiteProfiles | ARID domain profile. | 140 | 231 | IPR001606 | GO:0003677(InterPro) | |
Cco06g0804 | 586 | SMART | hmgende2 | 372 | 441 | IPR009071 | - | |
Cco06g0804 | 586 | Gene3D | - | 134 | 234 | IPR036431 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g1750 | Cco-Chr5:25891472 | Cco06g0804 | Cco-Chr6:9430549 | 8.60E-74 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59489 | PF01388 | ARID | 2.60E-17 | CL0123 | Cco | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0804 | - | - | - | 0.0 |