Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0804 ATGTTTGAGTTTGAGGATGAAGAACGAACCCCCCGCCATAACGTATTCCTCATTTTCCTCCATAACTTTCGTATTTTGCGATTCCTAATTTACCCTTCTCCTTCATCCAATATTCTCGCTTACTTCTTGGTTTTCTCTCGCATCAATGTCCTCTTAATTGGGGAATTGTGGAAAGATTTTCTTGCTGACTGGTGGAGAAGAATCAAGGAAGAGGGCTTTCCGGTTTTCCAAGACAAATCTATTTATAAAGTTTGTTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGCAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACCGCCAGCAATTGAAGTGTCTTCAAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACTTCCTTGGAAAAGCTCCACTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCTTCTACGGCCACCAATGCATCTTTTGTGCTGAGGAAGTACTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCACTAATTTCTGATTCTTCTCCATGCCCAAGTGCAGCGACAATTCCTATGCAAGGGATGACCTCTATGTTGCCGCCATCAGATAATCAGGCAGTGTCCCAGCAACCACGGATTACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCAGCAGGAGGGTTTCCAGTGATTGGAGTCATTGACGGAAAATTTGATAGTGGATATCTTGTTACTGTTACTGTTGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTTCTCAGCAGCAAGTTTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTGCTACCTCCACCGCACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATTAAGAGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAACCAGACCTGAATATGGTCTATGCTGACAAAAATGAAGAAACCGAGGGCGGTGAGTCTCCTCAAACACCAGATAATGATACAAGCTATGTGGAAGGCGACTCCGGAGAGTATAAAACGGAAGAGAAGGAGGAGGAAGAAGAAGAAGAAGATGAGGAGGAGGACTCGCAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTTAACGTTTTGGTTGAGGAGGAACAGTGTGAGACGAGAACAGCCGAAGAGGATGTTAGAAAAGATAGTAGCACGGTCGGTGACGATAAAGAAGTTTACGCCGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGACAGAACCCGAACCAACAACAGCCATTAGAGAAGATTAA 1761 44.86 MFEFEDEERTPRHNVFLIFLHNFRILRFLIYPSPSSNILAYFLVFSRINVLLIGELWKDFLADWWRRIKEEGFPVFQDKSIYKVCWLMIEEERTEAGWGSRKELTMASTSFAGGKQPPAIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPLISDSSPCPSAATIPMQGMTSMLPPSDNQAVSQQPRITELPAVSPSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPSQQQVLQPVGAFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPDNDTSYVEGDSGEYKTEEKEEEEEEEDEEEDSQEDASPQGIGNVDVNVLVEEEQCETRTAEEDVRKDSSTVGDDKEVYAGDSVMVEVEAKTEPEPTTAIRED 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9430549 9438552 - CcPI632755_06g008040.1 Cco06g0804 181404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0804 586 MobiDBLite consensus disorder prediction 353 367 - -
Cco06g0804 586 Gene3D High mobility group box domain 357 452 IPR036910 -
Cco06g0804 586 CDD HMG-box_AtHMGB9-like 373 439 - -
Cco06g0804 586 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 373 440 IPR009071 -
Cco06g0804 586 MobiDBLite consensus disorder prediction 471 586 - -
Cco06g0804 586 MobiDBLite consensus disorder prediction 344 380 - -
Cco06g0804 586 SMART bright_3 141 232 IPR001606 GO:0003677(InterPro)
Cco06g0804 586 FunFam High mobility group B protein 15 134 246 - -
Cco06g0804 586 FunFam High mobility group B protein 15 355 450 - -
Cco06g0804 586 SUPERFAMILY HMG-box 366 445 IPR036910 -
Cco06g0804 586 SMART ARID_2 137 227 - -
Cco06g0804 586 Coils Coil 422 442 - -
Cco06g0804 586 Coils Coil 495 520 - -
Cco06g0804 586 CDD ARID_HMGB9-like 142 227 IPR045303 GO:0003677(InterPro)
Cco06g0804 586 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 117 489 - -
Cco06g0804 586 MobiDBLite consensus disorder prediction 535 558 - -
Cco06g0804 586 Pfam ARID/BRIGHT DNA binding domain 143 227 IPR001606 GO:0003677(InterPro)
Cco06g0804 586 SUPERFAMILY ARID-like 137 243 IPR036431 GO:0003677(InterPro)
Cco06g0804 586 Pfam HMG (high mobility group) box 373 440 IPR009071 -
Cco06g0804 586 MobiDBLite consensus disorder prediction 499 519 - -
Cco06g0804 586 ProSiteProfiles ARID domain profile. 140 231 IPR001606 GO:0003677(InterPro)
Cco06g0804 586 SMART hmgende2 372 441 IPR009071 -
Cco06g0804 586 Gene3D - 134 234 IPR036431 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0804 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1750 Cco-Chr5:25891472 Cco06g0804 Cco-Chr6:9430549 8.60E-74 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g0804 . 119 470 ARID Transcription Factor Family AT1G04880 58.4 9.7e-108 387.5
Cco10g0007 . 300 570 ARID Transcription Factor Family AT1G20910 61.4 1.4e-91 333.6
Cco05g1750 . 16 309 ARID Transcription Factor Family AT1G76110 68.1 1.9e-111 399.4
Cco10g0007 . 279 600 ARID Transcription Factor Family AT1G76510 60.2 1.0e-109 394.0
Cco07g1514 . 1 764 ARID Transcription Factor Family AT3G43240 59.1 1.5e-259 892.5
Cco09g0135 . 120 859 ARID Transcription Factor Family AT3G43240 59.2 6.1e-256 880.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59489 PF01388 ARID 2.60E-17 CL0123 Cco TR