Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0804 ATGTTTGAGTTTGAGGATGAAGAACGAACCCCCCGCCATAACGTATTCCTCATTTTCCTCCATAACTTTCGTATTTTGCGATTCCTAATTTACCCTTCTCCTTCATCCAATATTCTCGCTTACTTCTTGGTTTTCTCTCGCATCAATGTCCTCTTAATTGGGGAATTGTGGAAAGATTTTCTTGCTGACTGGTGGAGAAGAATCAAGGAAGAGGGCTTTCCGGTTTTCCAAGACAAATCTATTTATAAAGTTTGTTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGCAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACCGCCAGCAATTGAAGTGTCTTCAAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACTTCCTTGGAAAAGCTCCACTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCTTCTACGGCCACCAATGCATCTTTTGTGCTGAGGAAGTACTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCACTAATTTCTGATTCTTCTCCATGCCCAAGTGCAGCGACAATTCCTATGCAAGGGATGACCTCTATGTTGCCGCCATCAGATAATCAGGCAGTGTCCCAGCAACCACGGATTACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCAGCAGGAGGGTTTCCAGTGATTGGAGTCATTGACGGAAAATTTGATAGTGGATATCTTGTTACTGTTACTGTTGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTTCTCAGCAGCAAGTTTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTGCTACCTCCACCGCACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATTAAGAGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAACCAGACCTGAATATGGTCTATGCTGACAAAAATGAAGAAACCGAGGGCGGTGAGTCTCCTCAAACACCAGATAATGATACAAGCTATGTGGAAGGCGACTCCGGAGAGTATAAAACGGAAGAGAAGGAGGAGGAAGAAGAAGAAGAAGATGAGGAGGAGGACTCGCAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTTAACGTTTTGGTTGAGGAGGAACAGTGTGAGACGAGAACAGCCGAAGAGGATGTTAGAAAAGATAGTAGCACGGTCGGTGACGATAAAGAAGTTTACGCCGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGACAGAACCCGAACCAACAACAGCCATTAGAGAAGATTAA 1761 44.86 MFEFEDEERTPRHNVFLIFLHNFRILRFLIYPSPSSNILAYFLVFSRINVLLIGELWKDFLADWWRRIKEEGFPVFQDKSIYKVCWLMIEEERTEAGWGSRKELTMASTSFAGGKQPPAIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPLISDSSPCPSAATIPMQGMTSMLPPSDNQAVSQQPRITELPAVSPSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPSQQQVLQPVGAFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPDNDTSYVEGDSGEYKTEEKEEEEEEEDEEEDSQEDASPQGIGNVDVNVLVEEEQCETRTAEEDVRKDSSTVGDDKEVYAGDSVMVEVEAKTEPEPTTAIRED 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9430549 9438552 - CcPI632755_06g008040.1 Cco06g0804 181404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0804 586 MobiDBLite consensus disorder prediction 353 367 - -
Cco06g0804 586 Gene3D High mobility group box domain 357 452 IPR036910 -
Cco06g0804 586 CDD HMG-box_AtHMGB9-like 373 439 - -
Cco06g0804 586 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 373 440 IPR009071 -
Cco06g0804 586 MobiDBLite consensus disorder prediction 471 586 - -
Cco06g0804 586 MobiDBLite consensus disorder prediction 344 380 - -
Cco06g0804 586 SMART bright_3 141 232 IPR001606 GO:0003677(InterPro)
Cco06g0804 586 FunFam High mobility group B protein 15 134 246 - -
Cco06g0804 586 FunFam High mobility group B protein 15 355 450 - -
Cco06g0804 586 SUPERFAMILY HMG-box 366 445 IPR036910 -
Cco06g0804 586 SMART ARID_2 137 227 - -
Cco06g0804 586 Coils Coil 422 442 - -
Cco06g0804 586 Coils Coil 495 520 - -
Cco06g0804 586 CDD ARID_HMGB9-like 142 227 IPR045303 GO:0003677(InterPro)
Cco06g0804 586 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 117 489 - -
Cco06g0804 586 MobiDBLite consensus disorder prediction 535 558 - -
Cco06g0804 586 Pfam ARID/BRIGHT DNA binding domain 143 227 IPR001606 GO:0003677(InterPro)
Cco06g0804 586 SUPERFAMILY ARID-like 137 243 IPR036431 GO:0003677(InterPro)
Cco06g0804 586 Pfam HMG (high mobility group) box 373 440 IPR009071 -
Cco06g0804 586 MobiDBLite consensus disorder prediction 499 519 - -
Cco06g0804 586 ProSiteProfiles ARID domain profile. 140 231 IPR001606 GO:0003677(InterPro)
Cco06g0804 586 SMART hmgende2 372 441 IPR009071 -
Cco06g0804 586 Gene3D - 134 234 IPR036431 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1750 Cco-Chr5:25891472 Cco06g0804 Cco-Chr6:9430549 8.60E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59489 PF01388 ARID 2.60E-17 CL0123 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0804 - - - 0.0