Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0822 | ATGGCGGCACTTAGTAAATGGCATTCTCTCTCTCTGTTTTCCCTTGCATTGGTGTTCTTCGTAACAATCGCTCTCGTTCGCAAAGAAGAGACCTCTGAAATTAGGACTGTGTTAGCGACGGAGTTTCAGAGCTCTAGCAACTCATCAATGGCGACTAGGCTGGAAAGTGATGATGTGGAGCAAGAATTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGTATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCCAATTGGCACCGCAACCGGAAGCGCCTTGCGGAATGTGGCATTGGGTTTGGTCGGAATGCTATTGGTGGGCGTGATGGTCGTTTCTATGTCGTAACTGATTCGAGTGACAACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAGCTCATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACATATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGTCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGGCTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTATACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCACCAACCAACCCTTTTGCCAAAGAGGTGACGAAGCGAGTCGAAACACCAGAGAGCGAATGGAAAGGGTGGAATTGGAGATCAGAAGGAGATATGTTGTTGAATGGTGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGTTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATCACTTCTTCTGCAGATTCAACCCGTTCACACCCTGCCGACTGCCGCTTCGCTGCTTTTGTCAACAAACGTGGCTCAGATCCGTTCGAGAAGAATGTGTTCGCACTACCTGCTTGA | 1416 | 46.68 | MAALSKWHSLSLFSLALVFFVTIALVRKEETSEIRTVLATEFQSSSNSSMATRLESDDVEQEFNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSADSTRSHPADCRFAAFVNKRGSDPFEKNVFALPA | 471 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9849896 | 9858075 | + | CcPI632755_06g008220.1 | Cco06g0822 | 181422 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0822 | 471 | SUPERFAMILY | Pectin lyase-like | 77 | 417 | IPR011050 | - | |
Cco06g0822 | 471 | FunFam | Pectate lyase | 100 | 442 | - | - | |
Cco06g0822 | 471 | Pfam | Pectate lyase | 187 | 364 | IPR002022 | - | |
Cco06g0822 | 471 | SMART | amb_all | 175 | 372 | IPR002022 | - | |
Cco06g0822 | 471 | PRINTS | Pollen allergen Amb family signature | 391 | 415 | IPR018082 | - | |
Cco06g0822 | 471 | PRINTS | Pollen allergen Amb family signature | 147 | 172 | IPR018082 | - | |
Cco06g0822 | 471 | PRINTS | Pollen allergen Amb family signature | 420 | 443 | IPR018082 | - | |
Cco06g0822 | 471 | PRINTS | Pollen allergen Amb family signature | 183 | 199 | IPR018082 | - | |
Cco06g0822 | 471 | PRINTS | Pollen allergen Amb family signature | 247 | 268 | IPR018082 | - | |
Cco06g0822 | 471 | PRINTS | Pollen allergen Amb family signature | 349 | 368 | IPR018082 | - | |
Cco06g0822 | 471 | PRINTS | Pollen allergen Amb family signature | 327 | 346 | IPR018082 | - | |
Cco06g0822 | 471 | PRINTS | Pollen allergen Amb family signature | 123 | 140 | IPR018082 | - | |
Cco06g0822 | 471 | Gene3D | - | 100 | 441 | IPR012334 | - | |
Cco06g0822 | 471 | PANTHER | PECTATE LYASE 18-RELATED | 18 | 438 | IPR045032 | GO:0030570(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2392 | Cco-Chr5:32401227 | Cco06g0822 | Cco-Chr6:9849896 | 5.30E-155 | dispersed | |
Cco06g0822 | Cco-Chr6:9849896 | Cco09g2155 | Cco-Chr9:35942371 | 3.00E-168 | dispersed | |
Cco05g0410 | Cco-Chr5:3388023 | Cco06g0822 | Cco-Chr6:9849896 | 4.60E-212 | wgd | |
Cco06g0822 | Cco-Chr6:9849896 | Cco07g0166 | Cco-Chr7:1788127 | 8.10E-190 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0822 | K01728 | - | csv:101217580 | 860.522 |