Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0822 ATGGCGGCACTTAGTAAATGGCATTCTCTCTCTCTGTTTTCCCTTGCATTGGTGTTCTTCGTAACAATCGCTCTCGTTCGCAAAGAAGAGACCTCTGAAATTAGGACTGTGTTAGCGACGGAGTTTCAGAGCTCTAGCAACTCATCAATGGCGACTAGGCTGGAAAGTGATGATGTGGAGCAAGAATTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGTATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCCAATTGGCACCGCAACCGGAAGCGCCTTGCGGAATGTGGCATTGGGTTTGGTCGGAATGCTATTGGTGGGCGTGATGGTCGTTTCTATGTCGTAACTGATTCGAGTGACAACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAGCTCATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACATATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGTCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGGCTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTATACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCACCAACCAACCCTTTTGCCAAAGAGGTGACGAAGCGAGTCGAAACACCAGAGAGCGAATGGAAAGGGTGGAATTGGAGATCAGAAGGAGATATGTTGTTGAATGGTGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGTTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATCACTTCTTCTGCAGATTCAACCCGTTCACACCCTGCCGACTGCCGCTTCGCTGCTTTTGTCAACAAACGTGGCTCAGATCCGTTCGAGAAGAATGTGTTCGCACTACCTGCTTGA 1416 46.68 MAALSKWHSLSLFSLALVFFVTIALVRKEETSEIRTVLATEFQSSSNSSMATRLESDDVEQEFNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSADSTRSHPADCRFAAFVNKRGSDPFEKNVFALPA 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9849896 9858075 + CcPI632755_06g008220.1 Cco06g0822 181422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0822 471 SUPERFAMILY Pectin lyase-like 77 417 IPR011050 -
Cco06g0822 471 FunFam Pectate lyase 100 442 - -
Cco06g0822 471 Pfam Pectate lyase 187 364 IPR002022 -
Cco06g0822 471 SMART amb_all 175 372 IPR002022 -
Cco06g0822 471 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Cco06g0822 471 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Cco06g0822 471 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Cco06g0822 471 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Cco06g0822 471 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Cco06g0822 471 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Cco06g0822 471 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Cco06g0822 471 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Cco06g0822 471 Gene3D - 100 441 IPR012334 -
Cco06g0822 471 PANTHER PECTATE LYASE 18-RELATED 18 438 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2392 Cco-Chr5:32401227 Cco06g0822 Cco-Chr6:9849896 5.30E-155 dispersed
Cco06g0822 Cco-Chr6:9849896 Cco09g2155 Cco-Chr9:35942371 3.00E-168 dispersed
Cco05g0410 Cco-Chr5:3388023 Cco06g0822 Cco-Chr6:9849896 4.60E-212 wgd
Cco06g0822 Cco-Chr6:9849896 Cco07g0166 Cco-Chr7:1788127 8.10E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0822 K01728 - csv:101217580 860.522