Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0832 ATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAGCGTGAACGTGGTATTACCATTGACATTGCTCTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGAACTTCACAGGCTGACTGTGCTGTCCTCATTATTGACTCCACTACCGGTGGTTTTGAGGCTGGTATTTCCAAGGATGGTCAGACCCGTGAGCACGCTCTTCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCTACCACTCCCAAATACTCCAAGGCAAGGTACGACGAAATCGTGAAGGAAGTCTCATCTTACCTCAAGAAGGTCGGATACAACCCAGAAAAAATCCCATTTGTTCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACTTGATCTCTGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCTGTTGGACGTGTTGAAACTGGTATCCTCAAGCCTGGTATGGTTGTCACCTTCGGACCAACTGGACTCACCACTGAAGTTAAGTCTGTTGAAATGCACCACGAGTCTCTGCCAGAGGCCTTGCCTGGTGACAATGTCGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACATCCCAGGTCATCATCATGAACCACCCTGGCCAGATTGGTAACGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTTGCTGAGATCCTCACCAAGATTGATCGTCGATCTGGTAAGGAGCTCGAAAAGGAGCCCAAATTCTTGAAGAACGGTGATGCTGGTATGGTTAAGATGGTTCCGACCAAGCCAATGGTTGTGGAGACCTTCTCCTCATACCCACCATTGGGTCGTTTTGCTGTTCGTGATATGCGTCAAACCGTTGCTGTTGGTGTGATCAAGAGTGTGGAGAAGAAGGACCCAACAGGAGCCAAGGTCACCAAATCCGCTGTCAAGAAGAAATAA 1200 49.25 MNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10018580 10020345 - CcPI632755_06g008320.1 Cco06g0832 181432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0832 399 Pfam Elongation factor Tu domain 2 200 265 IPR004161 GO:0005525(InterPro)
Cco06g0832 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 201 IPR027417 -
Cco06g0832 399 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 278 381 IPR009001 -
Cco06g0832 399 Pfam Elongation factor Tu GTP binding domain 8 173 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco06g0832 399 Gene3D Translation factors 275 382 - -
Cco06g0832 399 Gene3D - 1 178 IPR027417 -
Cco06g0832 399 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 182 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco06g0832 399 FunFam Elongation factor 1-alpha 275 382 - -
Cco06g0832 399 Pfam GTP-eEF1A C-terminal domain-like 279 379 IPR054696 -
Cco06g0832 399 FunFam Elongation factor 1-alpha 1 178 - -
Cco06g0832 399 CDD EF1_alpha_II 182 272 - -
Cco06g0832 399 CDD EF1_alpha_III 275 378 - -
Cco06g0832 399 NCBIfam translation elongation factor EF-1 subunit alpha 3 385 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Cco06g0832 399 FunFam Elongation factor 1-alpha 181 268 - -
Cco06g0832 399 SUPERFAMILY Translation proteins 183 273 IPR009000 -
Cco06g0832 399 PRINTS GTP-binding elongation factor signature 100 109 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco06g0832 399 PRINTS GTP-binding elongation factor signature 40 50 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco06g0832 399 PRINTS GTP-binding elongation factor signature 56 67 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco06g0832 399 PRINTS GTP-binding elongation factor signature 20 28 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco06g0832 399 CDD EF1_alpha 1 179 - -
Cco06g0832 399 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 13 28 IPR031157 -
Cco06g0832 399 PANTHER TRANSLATION FACTOR 1 379 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Cco06g0832 399 Gene3D Translation factors 181 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0832 Cco-Chr6:10018580 Cco09g2245 Cco-Chr9:36736683 9.20E-227 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0832 K03231 - csv:101215193 792.727