Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0834 ATGGAACGAAGGAGAGTTGTCGATTTTTGCCTAGATTTGGGTATGAAACAAAGGAGGGTTGTTGATTTCGGCCAGATCAGAGCGGAAGGAAGAATCCAATCCCCCGACTTGCTGCAAGGATTTCGATACGGATCCAAGAATTTGCCATCATCAATGGCGGGCCTATCTCTCAAGTGTGGGGATTGTGGCGCACTGTTGAGATCCGTAGAAGAAGCTCAACAACATGCCGAACTCACTTCTCACTCCAACTTCTCCGAGTCCACCGAAGCTGTGCTTAATCTTGTCTGCACTGCTTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACTGGCCATACCGAGTTTGCTGATAAGACTTTGGAGGCTGCAAAACCAATAAGTTTGGAGGCCCCAAAGGTAGATGCGGAATCAGAAGATGGTGGGGATGCAAGTGCTAGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTAAACAAGAATATTTTAGAGGAACTTGAAGCTATGGGCTTTCCAACAGCACGAGCAACCCGTGCACTTTTTTATTCTGGTAATGCCAGTCTTGAGGCTGCAGTCAATTGGGTAGTTGAACATGAAAATGATCCGGAGATAGATCAGATGCCTTTGGTTCCTAAGGATGCAAAGGTTGAGGCTCCAAAGCCTTCTCTTACACCTGAGCAATTGAAAGCAAAACAGCAGGAACTAAGGGATCGGGCTCGGAAGAAAAAAGAGGAGGAAGAGAAGATAGCGGAGAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGCAAGGAGCTCTTAGAAGCAAAAAGGATCGAGGAAGAAAATGAGAGAAAAAGAATATTAGCCTTGAGAAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGACAAAATTCGTCAAAAACTTGAAGAGGACAAGGCAGAAAGAAGACGGAGGCTTGGATTGCCACCAGAAGATCCTTCAACTGCAAAACCTGCGGCACCTGTTGTTGAAGAAAAAAAGATCTCATTACCTGTTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGTTTGCGATCGTTAAAGTCCAATCACAAGGAGGATGATGCTAAAGTGAAGAGAGCATTTCAAACCCTTCTAACATATGTGGGAAACGTGGTAAAAAATCCTGATGAAGAGAAGTTCAGAAAAATTAGACTTAGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGAGGAATTGAGTTTCTAGAGCTGTGTGGGTTCGAGAAAATTGAAGGTGGCGAGTTCTTGTTTCTGCCCAGAAACAAGGTTGACAGGGCAGTGCTCAATTCAGCTGGCTCTGAGCTCAACTCTGCTATAAAGAATCCCTTCTTTGGCGTTCTCTAA 1389 45.14 MERRRVVDFCLDLGMKQRRVVDFGQIRAEGRIQSPDLLQGFRYGSKNLPSSMAGLSLKCGDCGALLRSVEEAQQHAELTSHSNFSESTEAVLNLVCTACGKPCRSKTESDLHTKRTGHTEFADKTLEAAKPISLEAPKVDAESEDGGDASASKSEEMVVPEVNKNILEELEAMGFPTARATRALFYSGNASLEAAVNWVVEHENDPEIDQMPLVPKDAKVEAPKPSLTPEQLKAKQQELRDRARKKKEEEEKIAEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRARDKIRQKLEEDKAERRRRLGLPPEDPSTAKPAAPVVEEKKISLPVRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVVKNPDEEKFRKIRLSNQTFQDRVGALRGGIEFLELCGFEKIEGGEFLFLPRNKVDRAVLNSAGSELNSAIKNPFFGVL 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10060424 10070743 + CcPI632755_06g008340.1 Cco06g0834 181434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0834 462 Gene3D - 354 452 - -
Cco06g0834 462 SUPERFAMILY PUG domain-like 348 458 IPR036339 -
Cco06g0834 462 PANTHER F13M7.16 PROTEIN 52 462 - -
Cco06g0834 462 SUPERFAMILY UBA-like 148 215 IPR009060 GO:0005515(InterPro)
Cco06g0834 462 MobiDBLite consensus disorder prediction 234 259 - -
Cco06g0834 462 MobiDBLite consensus disorder prediction 137 151 - -
Cco06g0834 462 CDD UBA_PUB_plant 161 209 - -
Cco06g0834 462 SMART uba_6 163 201 IPR015940 -
Cco06g0834 462 Coils Coil 232 266 - -
Cco06g0834 462 ProSitePatterns Zinc finger C2H2 type domain signature. 59 81 IPR013087 -
Cco06g0834 462 Pfam UBA-like domain 163 210 IPR015940 -
Cco06g0834 462 Gene3D - 164 208 - -
Cco06g0834 462 SMART PGNneu 372 435 - -
Cco06g0834 462 MobiDBLite consensus disorder prediction 132 157 - -
Cco06g0834 462 ProSitePatterns Zinc finger C2H2 type domain signature. 96 118 IPR013087 -
Cco06g0834 462 Pfam PUB domain 369 440 IPR018997 -
Cco06g0834 462 MobiDBLite consensus disorder prediction 290 330 - -
Cco06g0834 462 MobiDBLite consensus disorder prediction 220 259 - -
Cco06g0834 462 CDD PUB_UBA_plant 356 462 - -
Cco06g0834 462 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 161 202 IPR015940 -
Cco06g0834 462 MobiDBLite consensus disorder prediction 290 321 - -
Cco06g0834 462 Coils Coil 275 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0834 Cco-Chr6:10060424 Cco11g1300 Cco-Chr11:25573307 2.00E-63 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0834 K24348 - csv:101215434 717.613