Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0867 ATGGGAGACGTTTCAGGCGCCGCCGCCGCCGCCGGAACCAAGACCACAAAGCTTCCTATTCCAGGAAAGAGGAACATTCTCATCACCAGCGCTCTTCCATATGTCAACAACGTTCCTCACCTCGGCAACATCATTGGCTGTGTGTTGAGTGCTGATGTTTTTGCTCGATACTGTCGTCTTAGAGGTTATAACGCTATTTACATTTGCGGAACCGATGAGTATGGAACGGCGACGGAGACAAAAGCAATGGAAGAGAAATGCTCTCCTAAAGAGATTTGTGACAAGTATCACGCGATTCACAAAGAAGTTTATAATTGGTTTGGTATTAGTTTTGATGAGTTTGGGCGCACATCATCGCCACAGCAGACTGAAGTTTGTCAAGCAATATTTGGCAAACTATTGGAGAACAATTGGCTTTCTGAGAACACGATGCAACAGCTGTACTGTGATACTTGTGAGAGATTTTTAGCCGATCGGCTCGTTGAAGGCATATGTCCTACTCCAGGTTGTGAGTATGACTCCGCACGTGGTGATCAGTGTGAGAAGTGCGGGAAACTTCTAAATCCAACTGAATTGAAAGACCCTAGGTGCAAGGTCTGTCAAACAACCCCACGTATCCGTGACACAAACCACATGTTTCTTGAACTTCCTTTGCTGAGAGAGAAACTGGAAGAATATATCAACAAGATGTCTGTAGCTGGATCTTGGAGCCAAAATGCTATTCAAGCAACACATGCTTGGCTTAAGGAAGGGTTGAAACCCCGGTGTATTACAAGAGATCTAAAGTGGGGGGTTCCCGTTCCACTTGAAAGGTTCAAGGACAAGGTCTTCTATGTCTGGTTTGATGCACCTATAGGATATGTCTCCATTACATCATGCTACACAAATGAATGGGAGAAATGGTGGAAGAATCCAGAAAACGTGGAGCTTTTTCAATTTATGGGAAAGGATAATGTGCCTTTCCACACGGTTATGTTTCCTTCTACTCTTCTTGGAACTGGAGAAGACTGGACCTTGATGAAAACCATTAGTGTTACTGAATATTTAAACTATGAAGCAGGAAAATTTTCTAAAAGTAAGGGCATAGGAGTTTTTGGTAATGATGCAAAAGATACAAATATTCCTGTAGAAGTATGGAGATATTACTTATTAGCCAATAGGCCTGAGGTTTCAGATACATTATTTACATGGGCTGATTTACAAGCAAAACTTAATGGTGAATTGCTGAACAATTTGGGCAACTTCATTCATCGAGTTTTGAGCTTCATTGCTAAACCTTTAGGGCAGGGTTATGGTTCCATTATTCCTGATGCTCTTGACGTGGACTCTCATGAATTAACATTGGGCTTGGCTGAAAAAGTTGGTAAATACGTAGACCAATATCTGGAATCAATGGAGAAGGTTAAACTAAAACAAGGTCTGAAAGCTGCAATGGCTATTTCAAGTGAGGGAAATATATATTTGCAAACAGCACAGTTCTGGAATCTTTACAAGGCGGACAAACCTTCCTGCAGTATTGTTATGAGAACTTCAGCTGGACTAGTACATCTTCTAGCATGTTTATTAGAACCTTTCATTCCTTCTTTCTCACTGGAGGTGTTTAGGCAGTTGGATTTACCTCCGGAACGACATATTTCACTTTGTGAAGAAAAAGGAGACATTGAGAGAGCAAAACAACCTTGGAAGATCCTACCTTCTGGTCATAAGATTGGCACACCAGAGCCACTATTCAAAGAATTGAAAGACGAAGAAGTAGAACTATACAGAGACAAGTTTGCTGGAAGTCAGGCTCAACGCATTGTGAGAGCAGAAGCTGAAGCAGAAAAGATTGCTGCTCAGCTAAAAAAAACTAACGTCTCAGGCAATGGAAAAAAGCAACAGGCAAAATCCACAGGCAGCAAACCGAAAACTGCTGTGGAGCCAGAAACTACGATTACGAGACTGGATATCCGTGTTGGGTTAATTACAAAAGCTCAGAAGCATCCTGATGCTGATTCCCTATATGTCGAGGAAATCGATGTGGGAGAATCGCAACCTCGAACCGTTGTCAGTGGATTAGTCAAGTACATACCTCTTGAAGAGATGCAGAACCGGAAGGTGTGTGTTCTTTGCAACTTGAAGCCGGCAGCCATGAGGGGCATTAAATCTCAAGCCATGGTTCTTGCTGCTTCCAATAGCGACCATACCAAGGTGGAATTAGTCGAGCCACCCAAAGACGCCAATGTTGGAGAAAGAATTAAATTCCCAGGATTCGAAGGCGAGCCCGACGATGTATTGAACCCAAAGAAGAAGGTATGGGAGACACTGCAGGTAGATTTGGCTACTAACACAGACCTGGTGGCATGTTTTAAAGATATACCATTTACCACATCAGCTGGTGTTTGCAAAGTTTCTTCCATTTCTAGTGGTTCTATCAGATATCAAATCCTTAGAATTATGTGGTCCGCGGTGGCCATTATCAAATCCATTACCACTCTTCATCTTTTGGACAGTGGCATATCAAATCCATTACCACCCATTTGCAATGTTAATCACCGCCAGCGTTCGGAAACAATTGTTTCTACCTTCCAATTCTAG 2577 42.57 MGDVSGAAAAAGTKTTKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKEICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLENNWLSENTMQQLYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELKDPRCKVCQTTPRIRDTNHMFLELPLLREKLEEYINKMSVAGSWSQNAIQATHAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQAKLNGELLNNLGNFIHRVLSFIAKPLGQGYGSIIPDALDVDSHELTLGLAEKVGKYVDQYLESMEKVKLKQGLKAAMAISSEGNIYLQTAQFWNLYKADKPSCSIVMRTSAGLVHLLACLLEPFIPSFSLEVFRQLDLPPERHISLCEEKGDIERAKQPWKILPSGHKIGTPEPLFKELKDEEVELYRDKFAGSQAQRIVRAEAEAEKIAAQLKKTNVSGNGKKQQAKSTGSKPKTAVEPETTITRLDIRVGLITKAQKHPDADSLYVEEIDVGESQPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIKSQAMVLAASNSDHTKVELVEPPKDANVGERIKFPGFEGEPDDVLNPKKKVWETLQVDLATNTDLVACFKDIPFTTSAGVCKVSSISSGSIRYQILRIMWSAVAIIKSITTLHLLDSGISNPLPPICNVNHRQRSETIVSTFQF 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10685995 10697663 + CcPI632755_06g008670.1 Cco06g0867 181467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0867 858 FunFam tyrosine--tRNA ligase, cytoplasmic isoform X2 643 806 - -
Cco06g0867 858 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 33 44 IPR001412 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cco06g0867 858 CDD tRNA_bind_EMAP-II_like 644 746 - -
Cco06g0867 858 SUPERFAMILY Nucleic acid-binding proteins 645 805 IPR012340 -
Cco06g0867 858 Gene3D - 409 579 - -
Cco06g0867 858 Pfam Putative tRNA binding domain 650 745 IPR002547 GO:0000049(InterPro)
Cco06g0867 858 Gene3D - 644 811 IPR012340 -
Cco06g0867 858 Pfam tRNA synthetases class I (M) 26 420 IPR015413 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cco06g0867 858 NCBIfam methionine--tRNA ligase 26 561 IPR014758 GO:0000166(InterPro)|GO:0004825(InterPro)|GO:0005524(InterPro)|GO:0006431(InterPro)
Cco06g0867 858 FunFam Methionine--tRNA ligase 161 197 - -
Cco06g0867 858 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 161 197 IPR029038 -
Cco06g0867 858 FunFam Methionine--tRNA ligase cytoplasmic 409 579 - -
Cco06g0867 858 MobiDBLite consensus disorder prediction 616 640 - -
Cco06g0867 858 Coils Coil 600 620 - -
Cco06g0867 858 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 412 592 IPR009080 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Cco06g0867 858 Gene3D - 161 197 IPR029038 -
Cco06g0867 858 ProSiteProfiles tRNA-binding domain profile. 644 747 IPR002547 GO:0000049(InterPro)
Cco06g0867 858 CDD MetRS_core 25 395 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cco06g0867 858 Pfam Anticodon binding domain of methionyl tRNA ligase 449 596 IPR041872 -
Cco06g0867 858 SUPERFAMILY Nucleotidylyl transferase 23 405 - -
Cco06g0867 858 CDD Anticodon_Ia_Met 404 537 IPR041872 -
Cco06g0867 858 PRINTS Methionyl-tRNA synthetase signature 109 120 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cco06g0867 858 PRINTS Methionyl-tRNA synthetase signature 28 41 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cco06g0867 858 PRINTS Methionyl-tRNA synthetase signature 312 327 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cco06g0867 858 PRINTS Methionyl-tRNA synthetase signature 277 288 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cco06g0867 858 PRINTS Methionyl-tRNA synthetase signature 61 75 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cco06g0867 858 PRINTS Methionyl-tRNA synthetase signature 407 418 IPR033911 GO:0004825(InterPro)|GO:0006431(InterPro)
Cco06g0867 858 Hamap Methionine--tRNA ligase [metG]. 24 591 IPR023458 GO:0004825(InterPro)
Cco06g0867 858 Gene3D HUPs 25 408 IPR014729 -
Cco06g0867 858 PANTHER METHIONINE--TRNA LIGASE 14 745 IPR023458 GO:0004825(InterPro)|GO:0004825(PANTHER)|GO:0005829(PANTHER)|GO:0006431(PANTHER)|GO:0017101(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0867 K01874 - - csv:101208697 1541.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0327 Cco-Chr4:9531053 Cco06g0867 Cco-Chr6:10685995 1.80E-14 dispersed
Cco06g0867 Cco-Chr6:10685995 Cco07g0540 Cco-Chr7:6934059 1.10E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48