Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0899 ATGAGGACTGAAAACCGAAAGAGGAAGCTGCGGCTAAGCAAGATCTATTCATTTGCTTGTGGAAAAACATCATTGAGAGATGAAGATCATTCACAAATTGGGAGGCCCGGGTTCTCCCGGGTGGTTTTCTGTAATGATCCTGATTGTTTGGAGGCTGGAATGCGTAATTATGTTAATAATTCCATCAAGTCTACAAAGTATACACCCATCAATTTTTTGCCCAAGTCCTTGTTTGAGCAGTTTAGGAGGGTGGCCAATTTTTACTTCTTGATTGCTGGAATACTAGCCTTCACTCCTCTTGCTCCTTTTACTGCCGTCAGTGCAATTATCCCTCTTATTGCAGTCATTATCGCGACAATGGTTAAAGAAGGTATTGAAGATTGGCGACGACAGGCACAGGATATTGAGGTGAATAATAGAAAGGTTAAGGTTCATCAAGGCAATGGAGTCTTTGACCTTACTGAATGGAAAACTTTGAGGGTCGGAGATATAGTGAAGGTTGAAAAGGATCAATACTTTCCAGCCGACCTTCTTTTAATTTCATCATGCTATGAGGATGGAATCTGTTACGTAGAAACGATGAACCTTGATGGGGAAACAAATCTGAAGGTAAAGCAAGCATTGGATGCAACTGCATTTGCAAATGAGGACTCTAACTTCCGTGATTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTTTATACCTTTGTTGGAAGCATGGACTTTGAAGAGCAACAATATCCACTTTCTCCTCAAAATCTTCTCCTGAGGGACTCCAAACTCCGAAACACAGAATATATATACGGGGTTGTTGTCTTTACTGGTCAAGATTCAAAGGTTATTCAAAATTCTACTGAGCCACCTTCCAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATCATATATCTGCTGTTAAGCATTCTATTCGTGCTGGCATTTATTGGTTCTATAGTCTTTGGTGTCGTGACTAAAGATGATCTAAAAAATGGGAGGACAAAGAGATGGTATCTTAGACCAGATGATTCTACTATTTTCTTTGATCCCAATAATGCACCAGCTGCTGCAATTTTTCACTTTCTGACTGCACTGATGTTGTATAACTACTTTATCCCTATATCCTTGTATGTGTCTATTGAAATTGTCAAAGTTCTTCAGAGTATCTTCATCAATCAAGACATTCATATGTACTATGAAGAAGCTGACAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAACTTGGTCAAGTTGACACTATACTCTCTGACAAGACTGGCACTTTGACCTGTAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGAACAGCTTATGGCAGTGGTGTCACTGAAACTGAGAGAGCTATGGAAGGCAGAAATAGTATGCCAATGCTTAATGGCAATGGCATTGGAAATATCCATAAGAGCAATGCGGATGCTTCAGATACAAATCCCTCTGTCAAAGGCTTTAATTTTAAGGACAAAAGGATTATGAACGGAAACTGGGTTAATGAACCTCATGCAGATGTCATCCAGAAGTTCTTCCGCCTCCTTGCAACTTGTCATACAGCTATTCCCGATGTGGATGAAAACACGGGAAAGGTTTCATATGAAGCTGAATCGCCAGATGAAGCAGCATTTGTAATTGCTGCCAGAGAAATTGGTTTTGAATTCTACCAGAGGACACAGACAAGTTTATCTATTCGTGAATTGGATCCTAGGTCTGGAAGGAAGGTCAAAAGGTCATATAAGCTTTTAAATGTTTTGGAGTTTAATAGCGCCCGAAAGAGGATGTCTGTCATAATTAGAGATGAAGAAGGGAAAGTGCTATTACTATGCAAAGGTGCTGACAGCGTCATGTTTGAGAGGCTTGCGAAGAATGCTAGAGAATTTGAAGAGAAAACGAAGGAGCATATCAATGAATATGCCGATGCAGGCCTACGGACCTTGTTACTTGCTTATCGTGAACTTGATGAGGAGGAATACAAGGAATTTGATAGGAAATTCTATGAAGCAAAGAATTCAGTTAGTGCAGAGAGGGAGGCAATGATTGATAAAGTAACAGATCGCATTGAGAGGAACTTAATTCTTCTTGGTTCCACAGCAGTTGAGGACAAGCTTCAAAATGGGGTCCCTGAATGCATAGACAAACTTGCTCAAGCTGGGATTAAGATCTGGGTTTTGACTGGGGACAAGATGGAGACTGCGATCAATATTGGTTTTGCCTGTAGTTTGCTGAGACAAGGAATGAAACAGATCATTATATCTCTGGAGACACCAGAAATTCAAGCCTTAGAAAGGTCGGGAGAGAAGGATATGATCACTAAGGCATCAAAAGAAAGTATCATCCACAAGATTAATCGGGCAAGATCTCAGATCACTGCATCAAGTGGAAGCTCTGAGGCTTATGCATTGATAATTGATGGGAAGTCACTTACTTATGCTCTAGAGGATGATGTGAAGGATGCATTCCTTGACCTTGCAATTGGATGTGCGTCTGTTATTTGTTGTCGCTCATCTCCAAAGCAAAAGGCAATGGTCACTAAGTTGGTTAAACTTGCAACGGGGAAAACAACATTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGAGTTGGAATCAGTGGTGCCGAAGGGATGCAGGCAGTCATGTCGAGTGATATTGCAATTGCTCAGTTCAGATATTTGGAGCGTCTTCTGCTTGTGCATGGACATTGGTGTTACAGGAGATTATCATCAATGATTTGCTACTTTTTCTACAAGAATTTCACATTTGGTTTTACGCTTTTCTTATATGAGGCATACACTTCGTTCTCTGGACAACCTGCATATAATGACTGGTTTATGTCACTCTACAACGTTGTGTTCTCGTCTCTGCCAGTTGTGGCCCTCGGGGTGTTTGACCAAGACGTGTCTGCAAGATACTGCCTTAAGTTTCCTATGTTGTACCAACAAGGTGTGCAGAACGTCCTCTTCAGCTGGGTTAGGATACTTGGCTGGATGTTTAATGGTCTTTGTAGTGCAGTGATCATTTTCTTTTTCTGCACAAGTGGAATGCAGCATCAAGCATTTAATTCGGAGGGGAAAACCGTGGGGAGGGATATTCTAGGAGCGACGATGCTGTCATGTGTTGTTTGGGTTGTCAACTTGCAGATGGCTCTCTCTGTTAGCTACTTCACTTTGGTACAGCATATTTTCATCTGGGCTTCAATCTTTATTTGGTACCTTTTTCTGATGATATATGGAGCCTTTCCTGCCAGCATTTCGACAACTGCATATCGCGTGTTCCTCGAAGCCCTTGCTCCTGCTGGGTCTTATTGGCTTCTGCTGATATTTGTGGCAAAGCTCATTGAGACCAACAACTGTGGGCTTCACTGCTCGTTTGGCAGCCAAAATAAGAAGAGAAAAAGCATAGAACTTGAAATTGAATCACCATTTCCCCAAAAGCTTCCAAAGCCAAACTCTCCCTTCTCATGCAAATCTTGCATAACCTTCTCAATCTCTTCCATACAACAACTCAACCCCAACTCATTTTCTTCACTTCTCATACATCTTCCCTTACTATTTCCTTCAAGCTCATCTCTCTTACCACCCTTTTCTTTCCCTACCATCTTTTCCTCTTTTTCTCTCATTCTTAGCCTTCTCTTTGCAAATTCTCTCGCCTTTCGAACGAGTTTCCATGGAAGCTTGAGTAACAAAAGGAGAATGATCTGCAACGCCAAGCATTGGCAGCAACAGCATATGACAATGCAGTCGGCCGCTAGTGTGTTCATATCTTCCATGGTGGCGGAAAATGGTTGA 3837 41.49 MRTENRKRKLRLSKIYSFACGKTSLRDEDHSQIGRPGFSRVVFCNDPDCLEAGMRNYVNNSIKSTKYTPINFLPKSLFEQFRRVANFYFLIAGILAFTPLAPFTAVSAIIPLIAVIIATMVKEGIEDWRRQAQDIEVNNRKVKVHQGNGVFDLTEWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVETMNLDGETNLKVKQALDATAFANEDSNFRDFKATIKCEDPNANLYTFVGSMDFEEQQYPLSPQNLLLRDSKLRNTEYIYGVVVFTGQDSKVIQNSTEPPSKRSKVEKKMDKIIYLLLSILFVLAFIGSIVFGVVTKDDLKNGRTKRWYLRPDDSTIFFDPNNAPAAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSGVTETERAMEGRNSMPMLNGNGIGNIHKSNADASDTNPSVKGFNFKDKRIMNGNWVNEPHADVIQKFFRLLATCHTAIPDVDENTGKVSYEAESPDEAAFVIAAREIGFEFYQRTQTSLSIRELDPRSGRKVKRSYKLLNVLEFNSARKRMSVIIRDEEGKVLLLCKGADSVMFERLAKNAREFEEKTKEHINEYADAGLRTLLLAYRELDEEEYKEFDRKFYEAKNSVSAEREAMIDKVTDRIERNLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIISLETPEIQALERSGEKDMITKASKESIIHKINRARSQITASSGSSEAYALIIDGKSLTYALEDDVKDAFLDLAIGCASVICCRSSPKQKAMVTKLVKLATGKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTLFLYEAYTSFSGQPAYNDWFMSLYNVVFSSLPVVALGVFDQDVSARYCLKFPMLYQQGVQNVLFSWVRILGWMFNGLCSAVIIFFFCTSGMQHQAFNSEGKTVGRDILGATMLSCVVWVVNLQMALSVSYFTLVQHIFIWASIFIWYLFLMIYGAFPASISTTAYRVFLEALAPAGSYWLLLIFVAKLIETNNCGLHCSFGSQNKKRKSIELEIESPFPQKLPKPNSPFSCKSCITFSISSIQQLNPNSFSSLLIHLPLLFPSSSSLLPPFSFPTIFSSFSLILSLLFANSLAFRTSFHGSLSNKRRMICNAKHWQQQHMTMQSAASVFISSMVAENG 1278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11443306 11451187 - CcPI632755_06g008990.1 Cco06g0899 181499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0899 1278 NCBIfam phospholipid-translocating P-type ATPase 57 1126 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cco06g0899 1278 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Cco06g0899 1278 Pfam Phospholipid-translocating P-type ATPase C-terminal 895 1126 IPR032630 -
Cco06g0899 1278 SFLD C1.7: P-type atpase like 408 918 - -
Cco06g0899 1278 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 433 674 IPR023299 GO:0000166(InterPro)
Cco06g0899 1278 Gene3D - 556 676 IPR023299 GO:0000166(InterPro)
Cco06g0899 1278 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Cco06g0899 1278 FunFam Phospholipid-transporting ATPase 703 907 - -
Cco06g0899 1278 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 28 1127 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Cco06g0899 1278 Pfam E1-E2 ATPase 138 328 - -
Cco06g0899 1278 SUPERFAMILY HAD-like 421 922 IPR036412 -
Cco06g0899 1278 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1126 IPR023298 -
Cco06g0899 1278 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Cco06g0899 1278 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Cco06g0899 1278 PRINTS P-type cation-transporting ATPase superfamily signature 867 886 - -
Cco06g0899 1278 FunFam Phospholipid-transporting ATPase 545 703 - -
Cco06g0899 1278 Coils Coil 626 646 - -
Cco06g0899 1278 Gene3D - 699 907 IPR023214 -
Cco06g0899 1278 Gene3D - 114 288 - -
Cco06g0899 1278 SFLD p-type atpase 408 918 IPR044492 -
Cco06g0899 1278 CDD P-type_ATPase_APLT_Dnf-like 59 1027 - -
Cco06g0899 1278 FunFam Phospholipid-transporting ATPase 118 288 - -
Cco06g0899 1278 Pfam Cation transport ATPase (P-type) 525 629 - -
Cco06g0899 1278 NCBIfam HAD-IC family P-type ATPase 833 949 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1733 Cco-Chr1:30045065 Cco06g0899 Cco-Chr6:11443306 0.00E+00 dispersed
Cco05g2749 Cco-Chr5:35341328 Cco06g0899 Cco-Chr6:11443306 5.10E-272 dispersed
Cco06g0899 Cco-Chr6:11443306 Cco09g0071 Cco-Chr9:617400 0.00E+00 dispersed
Cco06g0899 Cco-Chr6:11443306 Cco05g2589 Cco-Chr5:34145858 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0899 K01530 - csv:101205800 2154.02