Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0955 ATGTCGTCTCCGGCTCCGACCTCGCCGCCGGCCACTAACACGACCTCACCTCCACCTCCCACCACCACCGCACCACCCCCAGCACCTCCGTCTCTCTCACCGCCGCCTCCCGACGCTTCCTCTCAGCCTCCACCTGCTTCATCTCCGCCGCCTTCCACCACTCCTTCGCCGCCCCCTCCGGACACTACCACTCCATCTCCGCCTACTTCTTCTCCTTCACCGCCAACCACGCCTTCGAGCTCTTCGCCGCCGCCGCCTCCTCCGTCTACCAACTCGACTGCTCCCCCGCAGCTGCCGAGTCCGACGCCGCCCTTGGCTTCTGGCACACCTGCGAGTCCCGGAGCAAATCTGTCTCCGCCGTCTTCCTCACCATCGTCCGGTAATTCTGCCGGACTTGTAGCTGGAGTTGCTGTTGCTGGAGTGGTGGTAGTGGTTGTGGCGTTGATTGTTATGTTTTTGTGTTTAAGAAAGAAGAGAAGACGCGACGAGGAGGCTTACTACCGGCCCCCCCCGCCCGCGGCGTTTAAAGATGGCCCATATGGTCCACAACAGCACCACTGGCAATCACATCCCCCGCCGCCGCCGCCGTCAGATCATTTCGTGGGGGCAGTGCTCAAGCCGTCTCCTCCGCCAGCATCACGGCCACCGCTCTCACCTCCGATTATAAACAGCAGTGGAGGCTCTGGATCTAATTATTCGGGGTCTGAAAATTCGCTTGCTCCTGCTCCATCTTCTATTCCCTTGGGCTTCTCACAAAGCAGCTTCACTTATGAAGAGTTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAACCTCCTCGGACAAGGTGGGTTTGGTTATGTTCATAAAGGAGTACTTCCGAATGGAAAGGAAGTGGCAGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGTGAGCGTGAATTTCAAGCAGAAGTGGAAATAATCAGCCGAGTTCATCATAGACATCTTGTTTCCTTAGTGGGATATTGCATTACTGGCTCCAAAAGATTGCTGGTTTATGAATTTGTTCCCAACAACACATTGGAGTTCCACTTGCATGGGAAAGGACGACCCACCATGGACTGGCCAACGAGACTGAAAATTGCTTTGGGATCTGCCAAGGGATTAGCCTACCTTCATGAGGACTGTAATCCTAAGATTATTCATCGTGACATCAAAGCAGCAAATATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCAGATTTTGGGCTTGCTAAGCTGTCTTCTGATGTTAATACTCATGTTTCAACCCGAGTCATGGGAACTTTTGGATACCTTGCTCCTGAATATGCTTCAAGTGGGAAACTCACTGAGAAATCAGATGTCTTCTCCTTTGGAGTGATGCTTTTGGAGATGATTACTGGACGCAGACCTGTAGATACAACTCAATCATTCATGGACGATGGATTGCTTGATTGGGCAAGGCCATTACTGTTACGGGCCACTGAAGATGGGGTGTATGACGGTCTAGTAGATCCAAAGCTGAGAGATAACTATGACCACAACGAGATGGCTCGCATGGTTGCTTGCGCGGCCGCCTGTGTGCGCCATTCAGCAAGGCGCCGACCACGGATGAGTCAAGTGGTTCATGCTCTTGAAGGTGAAGCCTCACTTTCTGATCTTAATGAAGGGATTCGACCTGGACATAGCTCTGTCTACAGTTCTTATGGAAGCTCTGACTACGACACAGCTCAGTACAATGAGGACCTGAAAAAGTTCAGGAAGATGGCGTTGGCGAGTCAGGAGTACGGCAGTGAGTACAGCGAGCCAACGAGTGAGTATGGTTTGTATCCATCTGGGTCGAGTGGCGATGGCCAAACAACCAGGGAAATGGAGATGAGAACGATGAAGAAAGAAAGTGGAGGTTTTAATGGAAGCTCATAA 1908 51.99 MSSPAPTSPPATNTTSPPPPTTTAPPPAPPSLSPPPPDASSQPPPASSPPPSTTPSPPPPDTTTPSPPTSSPSPPTTPSSSSPPPPPPSTNSTAPPQLPSPTPPLASGTPASPGANLSPPSSSPSSGNSAGLVAGVAVAGVVVVVVALIVMFLCLRKKRRRDEEAYYRPPPPAAFKDGPYGPQQHHWQSHPPPPPPSDHFVGAVLKPSPPPASRPPLSPPIINSSGGSGSNYSGSENSLAPAPSSIPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSKRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEMITGRRPVDTTQSFMDDGLLDWARPLLLRATEDGVYDGLVDPKLRDNYDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSSVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEMRTMKKESGGFNGSS 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12836502 12839066 + CcPI632755_06g009550.1 Cco06g0955 181555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0955 635 Gene3D Phosphorylase Kinase; domain 1 242 342 - -
Cco06g0955 635 MobiDBLite consensus disorder prediction 186 200 - -
Cco06g0955 635 MobiDBLite consensus disorder prediction 163 238 - -
Cco06g0955 635 MobiDBLite consensus disorder prediction 1 129 - -
Cco06g0955 635 MobiDBLite consensus disorder prediction 592 617 - -
Cco06g0955 635 Pfam Protein tyrosine and serine/threonine kinase 271 540 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0955 635 ProSitePatterns Protein kinases ATP-binding region signature. 273 295 IPR017441 GO:0005524(InterPro)
Cco06g0955 635 PRINTS Proline rich extensin signature 4 20 - -
Cco06g0955 635 PRINTS Proline rich extensin signature 47 72 - -
Cco06g0955 635 PRINTS Proline rich extensin signature 26 43 - -
Cco06g0955 635 MobiDBLite consensus disorder prediction 109 129 - -
Cco06g0955 635 MobiDBLite consensus disorder prediction 219 238 - -
Cco06g0955 635 FunFam Proline-rich receptor-like protein kinase PERK1 343 551 - -
Cco06g0955 635 SUPERFAMILY Protein kinase-like (PK-like) 242 540 IPR011009 -
Cco06g0955 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0955 635 MobiDBLite consensus disorder prediction 1 108 - -
Cco06g0955 635 FunFam proline-rich receptor-like protein kinase PERK1 245 342 - -
Cco06g0955 635 Gene3D Transferase(Phosphotransferase) domain 1 343 552 - -
Cco06g0955 635 ProSiteProfiles Protein kinase domain profile. 267 546 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0955 635 MobiDBLite consensus disorder prediction 592 635 - -
Cco06g0955 635 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 87 584 IPR047117 -
Cco06g0955 635 SMART serkin_6 267 516 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2803 Cco-Chr5:35769121 Cco06g0955 Cco-Chr6:12836502 5.70E-132 dispersed
Cco06g0955 Cco-Chr6:12836502 Cco11g0459 Cco-Chr11:4829412 4.50E-159 dispersed
Cco11g0264 Cco-Chr11:2575393 Cco06g0955 Cco-Chr6:12836502 7.40E-197 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86919 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0955 - - - 0.0