Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0955 | ATGTCGTCTCCGGCTCCGACCTCGCCGCCGGCCACTAACACGACCTCACCTCCACCTCCCACCACCACCGCACCACCCCCAGCACCTCCGTCTCTCTCACCGCCGCCTCCCGACGCTTCCTCTCAGCCTCCACCTGCTTCATCTCCGCCGCCTTCCACCACTCCTTCGCCGCCCCCTCCGGACACTACCACTCCATCTCCGCCTACTTCTTCTCCTTCACCGCCAACCACGCCTTCGAGCTCTTCGCCGCCGCCGCCTCCTCCGTCTACCAACTCGACTGCTCCCCCGCAGCTGCCGAGTCCGACGCCGCCCTTGGCTTCTGGCACACCTGCGAGTCCCGGAGCAAATCTGTCTCCGCCGTCTTCCTCACCATCGTCCGGTAATTCTGCCGGACTTGTAGCTGGAGTTGCTGTTGCTGGAGTGGTGGTAGTGGTTGTGGCGTTGATTGTTATGTTTTTGTGTTTAAGAAAGAAGAGAAGACGCGACGAGGAGGCTTACTACCGGCCCCCCCCGCCCGCGGCGTTTAAAGATGGCCCATATGGTCCACAACAGCACCACTGGCAATCACATCCCCCGCCGCCGCCGCCGTCAGATCATTTCGTGGGGGCAGTGCTCAAGCCGTCTCCTCCGCCAGCATCACGGCCACCGCTCTCACCTCCGATTATAAACAGCAGTGGAGGCTCTGGATCTAATTATTCGGGGTCTGAAAATTCGCTTGCTCCTGCTCCATCTTCTATTCCCTTGGGCTTCTCACAAAGCAGCTTCACTTATGAAGAGTTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAACCTCCTCGGACAAGGTGGGTTTGGTTATGTTCATAAAGGAGTACTTCCGAATGGAAAGGAAGTGGCAGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGTGAGCGTGAATTTCAAGCAGAAGTGGAAATAATCAGCCGAGTTCATCATAGACATCTTGTTTCCTTAGTGGGATATTGCATTACTGGCTCCAAAAGATTGCTGGTTTATGAATTTGTTCCCAACAACACATTGGAGTTCCACTTGCATGGGAAAGGACGACCCACCATGGACTGGCCAACGAGACTGAAAATTGCTTTGGGATCTGCCAAGGGATTAGCCTACCTTCATGAGGACTGTAATCCTAAGATTATTCATCGTGACATCAAAGCAGCAAATATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCAGATTTTGGGCTTGCTAAGCTGTCTTCTGATGTTAATACTCATGTTTCAACCCGAGTCATGGGAACTTTTGGATACCTTGCTCCTGAATATGCTTCAAGTGGGAAACTCACTGAGAAATCAGATGTCTTCTCCTTTGGAGTGATGCTTTTGGAGATGATTACTGGACGCAGACCTGTAGATACAACTCAATCATTCATGGACGATGGATTGCTTGATTGGGCAAGGCCATTACTGTTACGGGCCACTGAAGATGGGGTGTATGACGGTCTAGTAGATCCAAAGCTGAGAGATAACTATGACCACAACGAGATGGCTCGCATGGTTGCTTGCGCGGCCGCCTGTGTGCGCCATTCAGCAAGGCGCCGACCACGGATGAGTCAAGTGGTTCATGCTCTTGAAGGTGAAGCCTCACTTTCTGATCTTAATGAAGGGATTCGACCTGGACATAGCTCTGTCTACAGTTCTTATGGAAGCTCTGACTACGACACAGCTCAGTACAATGAGGACCTGAAAAAGTTCAGGAAGATGGCGTTGGCGAGTCAGGAGTACGGCAGTGAGTACAGCGAGCCAACGAGTGAGTATGGTTTGTATCCATCTGGGTCGAGTGGCGATGGCCAAACAACCAGGGAAATGGAGATGAGAACGATGAAGAAAGAAAGTGGAGGTTTTAATGGAAGCTCATAA | 1908 | 51.99 | MSSPAPTSPPATNTTSPPPPTTTAPPPAPPSLSPPPPDASSQPPPASSPPPSTTPSPPPPDTTTPSPPTSSPSPPTTPSSSSPPPPPPSTNSTAPPQLPSPTPPLASGTPASPGANLSPPSSSPSSGNSAGLVAGVAVAGVVVVVVALIVMFLCLRKKRRRDEEAYYRPPPPAAFKDGPYGPQQHHWQSHPPPPPPSDHFVGAVLKPSPPPASRPPLSPPIINSSGGSGSNYSGSENSLAPAPSSIPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSKRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEMITGRRPVDTTQSFMDDGLLDWARPLLLRATEDGVYDGLVDPKLRDNYDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSSVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEMRTMKKESGGFNGSS | 635 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 12836502 | 12839066 | + | CcPI632755_06g009550.1 | Cco06g0955 | 181555 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0955 | 635 | Gene3D | Phosphorylase Kinase; domain 1 | 242 | 342 | - | - | |
Cco06g0955 | 635 | MobiDBLite | consensus disorder prediction | 186 | 200 | - | - | |
Cco06g0955 | 635 | MobiDBLite | consensus disorder prediction | 163 | 238 | - | - | |
Cco06g0955 | 635 | MobiDBLite | consensus disorder prediction | 1 | 129 | - | - | |
Cco06g0955 | 635 | MobiDBLite | consensus disorder prediction | 592 | 617 | - | - | |
Cco06g0955 | 635 | Pfam | Protein tyrosine and serine/threonine kinase | 271 | 540 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0955 | 635 | ProSitePatterns | Protein kinases ATP-binding region signature. | 273 | 295 | IPR017441 | GO:0005524(InterPro) | |
Cco06g0955 | 635 | PRINTS | Proline rich extensin signature | 4 | 20 | - | - | |
Cco06g0955 | 635 | PRINTS | Proline rich extensin signature | 47 | 72 | - | - | |
Cco06g0955 | 635 | PRINTS | Proline rich extensin signature | 26 | 43 | - | - | |
Cco06g0955 | 635 | MobiDBLite | consensus disorder prediction | 109 | 129 | - | - | |
Cco06g0955 | 635 | MobiDBLite | consensus disorder prediction | 219 | 238 | - | - | |
Cco06g0955 | 635 | FunFam | Proline-rich receptor-like protein kinase PERK1 | 343 | 551 | - | - | |
Cco06g0955 | 635 | SUPERFAMILY | Protein kinase-like (PK-like) | 242 | 540 | IPR011009 | - | |
Cco06g0955 | 635 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 387 | 399 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0955 | 635 | MobiDBLite | consensus disorder prediction | 1 | 108 | - | - | |
Cco06g0955 | 635 | FunFam | proline-rich receptor-like protein kinase PERK1 | 245 | 342 | - | - | |
Cco06g0955 | 635 | Gene3D | Transferase(Phosphotransferase) domain 1 | 343 | 552 | - | - | |
Cco06g0955 | 635 | ProSiteProfiles | Protein kinase domain profile. | 267 | 546 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0955 | 635 | MobiDBLite | consensus disorder prediction | 592 | 635 | - | - | |
Cco06g0955 | 635 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 87 | 584 | IPR047117 | - | |
Cco06g0955 | 635 | SMART | serkin_6 | 267 | 516 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2803 | Cco-Chr5:35769121 | Cco06g0955 | Cco-Chr6:12836502 | 5.70E-132 | dispersed | |
Cco06g0955 | Cco-Chr6:12836502 | Cco11g0459 | Cco-Chr11:4829412 | 4.50E-159 | dispersed | |
Cco11g0264 | Cco-Chr11:2575393 | Cco06g0955 | Cco-Chr6:12836502 | 7.40E-197 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86919 | PF07714 | PK_Tyr_Ser-Thr | 1.80E-46 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0955 | - | - | - | 0.0 |