Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0973 | ATGTGTTGCATGATTCTCAATCTTATAAACAAGGAGATGAGTGATAGTGAATTGCTCAAGGATTTGGATGAGATGGATTCCAATTCAACTACTATTAGGGGGACAAGATTTGAATTGTACCCTAATCTTTGGACCAATCTCACCGTTGAATATTTGGAAAAGATTGAAATTCAAAATCTCGAGAGGGAGAGAAACGAAGAACCCCTAGGCGTCGTCTCTTTTAGTTTTCCTTCCCGTCGGCTATCTTCGAGCATCAAAGTGCTTGTGATTTCAGGGAATCGTGAGATGGATAATTTACCCCCGCTAAATGCTCAAACTGATAGTGCGGAACCGGGTAATGTTTCATCTGATGCTCCTGCTAAAAGACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCATGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATATGACGGTTTTGCCCATTGTAACAAAAGCGTCTCATCCTGCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTAGTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGTAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGGAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACTAGAGAGCAGGGATGAGATTGGAGAAGTAGTAATACTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGGTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCGGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCGTCTCCCTTCCCAGTTGCTCATGTTGGCAATGGCAGCCCTGCAGCATCGGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATGAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCGAAGTGATAGGAGTGTACACGATAATTCAAATTCAGATGGTTTGGATATTACAAAAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTCGGCAGGCCATGATTGCAACACATCATCACATATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTAGGAGAGATAAAAGAAACAAAATTCACTTCTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTACCACCAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTCGCTCTCTCGGCACACAGAATAACGCCAGTCAGTGCTGCAGCTCGTCATCCGAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGTTTGCTTCCTGAGACTGGTCTGTTCAAGTTAGTTGGTTGTCTCATTTTAACGTATATCATTCGTTCTTATATCATCATTAGAATTCTAGGCGAATTTTGTGTTCCAAATTTCAATCGTAGATAG | 2145 | 43.22 | MCCMILNLINKEMSDSELLKDLDEMDSNSTTIRGTRFELYPNLWTNLTVEYLEKIEIQNLERERNEEPLGVVSFSFPSRRLSSSIKVLVISGNREMDNLPPLNAQTDSAEPGNVSSDAPAKRLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHMTVLPIVTKASHPARKPDSPKSRSRSSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRRGAVETTLERNPNAFRPKIASSPHGTLESRDEIGEVVILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVMSSGTSTSSPFPVAHVGNGSPAASGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDESQHQKAEEKAADGECGSSNRSDRSVHDNSNSDGLDITKARPMSPGTLALMCDERDTMFMGAGLADGSAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTSRSEVGNENLSNNFTSNNGYHQRSISNGVVKNVALSAHRITPVSAAARHPNNDLLLKILPLPKNSLLPETGLFKLVGCLILTYIIRSYIIIRILGEFCVPNFNRR | 714 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 13123099 | 13130383 | - | CcPI632755_06g009730.1 | Cco06g0973 | 181573 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0973 | 714 | MobiDBLite | consensus disorder prediction | 140 | 202 | - | - | |
Cco06g0973 | 714 | MobiDBLite | consensus disorder prediction | 185 | 202 | - | - | |
Cco06g0973 | 714 | SMART | CXC_2 | 207 | 247 | IPR033467 | - | |
Cco06g0973 | 714 | SMART | CXC_2 | 292 | 333 | IPR033467 | - | |
Cco06g0973 | 714 | ProSiteProfiles | CRC domain profile. | 208 | 332 | IPR005172 | - | |
Cco06g0973 | 714 | MobiDBLite | consensus disorder prediction | 144 | 175 | - | - | |
Cco06g0973 | 714 | MobiDBLite | consensus disorder prediction | 471 | 533 | - | - | |
Cco06g0973 | 714 | PANTHER | TESMIN/TSO1-RELATED | 137 | 607 | IPR028307 | GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
Cco06g0973 | 714 | MobiDBLite | consensus disorder prediction | 492 | 521 | - | - | |
Cco06g0973 | 714 | MobiDBLite | consensus disorder prediction | 475 | 491 | - | - | |
Cco06g0973 | 714 | Pfam | Tesmin/TSO1-like CXC domain, cysteine-rich domain | 295 | 329 | IPR005172 | - | |
Cco06g0973 | 714 | Pfam | Tesmin/TSO1-like CXC domain, cysteine-rich domain | 209 | 244 | IPR005172 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0973 | Cco-Chr6:13123099 | Cco08g1476 | Cco-Chr8:26619917 | 2.50E-25 | dispersed | |
Cco11g0258 | Cco-Chr11:2517274 | Cco06g0973 | Cco-Chr6:13123099 | 2.20E-168 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59496 | PF03638 | TCR | 3.90E-12 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0973 | - | - | - | 0.0 |