Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0973 ATGTGTTGCATGATTCTCAATCTTATAAACAAGGAGATGAGTGATAGTGAATTGCTCAAGGATTTGGATGAGATGGATTCCAATTCAACTACTATTAGGGGGACAAGATTTGAATTGTACCCTAATCTTTGGACCAATCTCACCGTTGAATATTTGGAAAAGATTGAAATTCAAAATCTCGAGAGGGAGAGAAACGAAGAACCCCTAGGCGTCGTCTCTTTTAGTTTTCCTTCCCGTCGGCTATCTTCGAGCATCAAAGTGCTTGTGATTTCAGGGAATCGTGAGATGGATAATTTACCCCCGCTAAATGCTCAAACTGATAGTGCGGAACCGGGTAATGTTTCATCTGATGCTCCTGCTAAAAGACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCATGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATATGACGGTTTTGCCCATTGTAACAAAAGCGTCTCATCCTGCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTAGTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGTAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGGAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACTAGAGAGCAGGGATGAGATTGGAGAAGTAGTAATACTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGGTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCGGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCGTCTCCCTTCCCAGTTGCTCATGTTGGCAATGGCAGCCCTGCAGCATCGGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATGAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCGAAGTGATAGGAGTGTACACGATAATTCAAATTCAGATGGTTTGGATATTACAAAAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTCGGCAGGCCATGATTGCAACACATCATCACATATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTAGGAGAGATAAAAGAAACAAAATTCACTTCTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTACCACCAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTCGCTCTCTCGGCACACAGAATAACGCCAGTCAGTGCTGCAGCTCGTCATCCGAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGTTTGCTTCCTGAGACTGGTCTGTTCAAGTTAGTTGGTTGTCTCATTTTAACGTATATCATTCGTTCTTATATCATCATTAGAATTCTAGGCGAATTTTGTGTTCCAAATTTCAATCGTAGATAG 2145 43.22 MCCMILNLINKEMSDSELLKDLDEMDSNSTTIRGTRFELYPNLWTNLTVEYLEKIEIQNLERERNEEPLGVVSFSFPSRRLSSSIKVLVISGNREMDNLPPLNAQTDSAEPGNVSSDAPAKRLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHMTVLPIVTKASHPARKPDSPKSRSRSSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRRGAVETTLERNPNAFRPKIASSPHGTLESRDEIGEVVILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVMSSGTSTSSPFPVAHVGNGSPAASGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDESQHQKAEEKAADGECGSSNRSDRSVHDNSNSDGLDITKARPMSPGTLALMCDERDTMFMGAGLADGSAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTSRSEVGNENLSNNFTSNNGYHQRSISNGVVKNVALSAHRITPVSAAARHPNNDLLLKILPLPKNSLLPETGLFKLVGCLILTYIIRSYIIIRILGEFCVPNFNRR 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13123099 13130383 - CcPI632755_06g009730.1 Cco06g0973 181573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0973 714 MobiDBLite consensus disorder prediction 140 202 - -
Cco06g0973 714 MobiDBLite consensus disorder prediction 185 202 - -
Cco06g0973 714 SMART CXC_2 207 247 IPR033467 -
Cco06g0973 714 SMART CXC_2 292 333 IPR033467 -
Cco06g0973 714 ProSiteProfiles CRC domain profile. 208 332 IPR005172 -
Cco06g0973 714 MobiDBLite consensus disorder prediction 144 175 - -
Cco06g0973 714 MobiDBLite consensus disorder prediction 471 533 - -
Cco06g0973 714 PANTHER TESMIN/TSO1-RELATED 137 607 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cco06g0973 714 MobiDBLite consensus disorder prediction 492 521 - -
Cco06g0973 714 MobiDBLite consensus disorder prediction 475 491 - -
Cco06g0973 714 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 295 329 IPR005172 -
Cco06g0973 714 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 209 244 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0973 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0973 Cco-Chr6:13123099 Cco08g1476 Cco-Chr8:26619917 2.50E-25 dispersed
Cco11g0258 Cco-Chr11:2517274 Cco06g0973 Cco-Chr6:13123099 2.20E-168 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1476 . 294 419 CPP Transcription Factor Family AT3G22780 57.1 1.9e-38 157.9
Cco08g1476 . 266 419 CPP Transcription Factor Family AT4G14770 51.3 4.3e-40 163.3
Cco11g0258 . 92 521 CPP Transcription Factor Family AT2G20110 61.9 5.6e-142 501.5
Cco06g0973 . 124 606 CPP Transcription Factor Family AT2G20110 52.7 9.5e-126 447.6
Cco11g0258 . 29 528 CPP Transcription Factor Family AT4G29000 56.8 1.5e-151 533.5
Cco06g0973 . 114 637 CPP Transcription Factor Family AT4G29000 53.3 1.3e-144 510.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59496 PF03638 TCR 3.90E-12 No_clan Cco TF