Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0973 ATGTGTTGCATGATTCTCAATCTTATAAACAAGGAGATGAGTGATAGTGAATTGCTCAAGGATTTGGATGAGATGGATTCCAATTCAACTACTATTAGGGGGACAAGATTTGAATTGTACCCTAATCTTTGGACCAATCTCACCGTTGAATATTTGGAAAAGATTGAAATTCAAAATCTCGAGAGGGAGAGAAACGAAGAACCCCTAGGCGTCGTCTCTTTTAGTTTTCCTTCCCGTCGGCTATCTTCGAGCATCAAAGTGCTTGTGATTTCAGGGAATCGTGAGATGGATAATTTACCCCCGCTAAATGCTCAAACTGATAGTGCGGAACCGGGTAATGTTTCATCTGATGCTCCTGCTAAAAGACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCATGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATATGACGGTTTTGCCCATTGTAACAAAAGCGTCTCATCCTGCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTAGTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGTAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGGAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACTAGAGAGCAGGGATGAGATTGGAGAAGTAGTAATACTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGGTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCGGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAATGTCTTCAGGCACGTCTACTTCGTCTCCCTTCCCAGTTGCTCATGTTGGCAATGGCAGCCCTGCAGCATCGGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATGAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCGAAGTGATAGGAGTGTACACGATAATTCAAATTCAGATGGTTTGGATATTACAAAAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTCGGCAGGCCATGATTGCAACACATCATCACATATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTAGGAGAGATAAAAGAAACAAAATTCACTTCTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTACCACCAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTCGCTCTCTCGGCACACAGAATAACGCCAGTCAGTGCTGCAGCTCGTCATCCGAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGTTTGCTTCCTGAGACTGGTCTGTTCAAGTTAGTTGGTTGTCTCATTTTAACGTATATCATTCGTTCTTATATCATCATTAGAATTCTAGGCGAATTTTGTGTTCCAAATTTCAATCGTAGATAG 2145 43.22 MCCMILNLINKEMSDSELLKDLDEMDSNSTTIRGTRFELYPNLWTNLTVEYLEKIEIQNLERERNEEPLGVVSFSFPSRRLSSSIKVLVISGNREMDNLPPLNAQTDSAEPGNVSSDAPAKRLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHMTVLPIVTKASHPARKPDSPKSRSRSSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRRGAVETTLERNPNAFRPKIASSPHGTLESRDEIGEVVILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVMSSGTSTSSPFPVAHVGNGSPAASGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDESQHQKAEEKAADGECGSSNRSDRSVHDNSNSDGLDITKARPMSPGTLALMCDERDTMFMGAGLADGSAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTSRSEVGNENLSNNFTSNNGYHQRSISNGVVKNVALSAHRITPVSAAARHPNNDLLLKILPLPKNSLLPETGLFKLVGCLILTYIIRSYIIIRILGEFCVPNFNRR 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13123099 13130383 - CcPI632755_06g009730.1 Cco06g0973 181573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0973 714 MobiDBLite consensus disorder prediction 140 202 - -
Cco06g0973 714 MobiDBLite consensus disorder prediction 185 202 - -
Cco06g0973 714 SMART CXC_2 207 247 IPR033467 -
Cco06g0973 714 SMART CXC_2 292 333 IPR033467 -
Cco06g0973 714 ProSiteProfiles CRC domain profile. 208 332 IPR005172 -
Cco06g0973 714 MobiDBLite consensus disorder prediction 144 175 - -
Cco06g0973 714 MobiDBLite consensus disorder prediction 471 533 - -
Cco06g0973 714 PANTHER TESMIN/TSO1-RELATED 137 607 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cco06g0973 714 MobiDBLite consensus disorder prediction 492 521 - -
Cco06g0973 714 MobiDBLite consensus disorder prediction 475 491 - -
Cco06g0973 714 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 295 329 IPR005172 -
Cco06g0973 714 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 209 244 IPR005172 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0973 Cco-Chr6:13123099 Cco08g1476 Cco-Chr8:26619917 2.50E-25 dispersed
Cco11g0258 Cco-Chr11:2517274 Cco06g0973 Cco-Chr6:13123099 2.20E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59496 PF03638 TCR 3.90E-12 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0973 - - - 0.0