Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1008 ATGATCCGGTTAAGTTTGATTGTTTTTTTCCTCTTTTCTGTGTTCTTTGTTGTTGAAGCTCAAATTGATTCTCAAGATCCTGAAAATGCTGCTTTTCAACCAAGTCTTGGCTTTGTGATAGGGATTTTGGCAGTTATGTTTTTGTTGACATTTATTCTTCTTGTATATGCAAAGTTCTGCCATAGAAGATCTTCTGTTCGTGGGGATGATGTAAATCTTCCTAGACAAATCAGGTCAAGTTCTCGGCTTTCTGGACTCGATAAGACGGTGATCGAGTCTCTTCCATTCTTTAGATTCTCCACATTGAAAGGGTCCAAAGAAGGGCTGGAATGTGCAGTCTGTCTTTCGAAATTTGAAGATATCGAAATTCTCCGGTTGTTGCCGAAGTGCAAACATGCATTTCATATTAACTGCATTGATCATTGGCTCGAGAAACATGCTAGCTGTCCTCTTTGCAGGCAAAGAGTTGGCTCTGAGGACTTGAAGCTCCTTGCTACTTCAAACAGCATGAGGTTCTTATTGAGCAACTTATCAGAGCTGAAACAAGACTCAAACATAGAGCTCTTTGTACAAAGAGAAGAAGAAGAACAACGACAAATACTCCATGGCTCTTCTAGATTCAGCATTGGAAGAAGCTTCAGAAAGATCTTAAGGAGTGATAAGGAAGAGGAAATGTTGATACAAAAGGCTTGTGGTGATGGAGATGAGGACATGAAGAACTTACACAGACACAACCACAAAATTATCGTATCCGATTTTGTTTTCATGAATCGATGGAGCAACGTAAGTTCGTCAGACCTGATGTTCTTGAACAAAGAGATGATGGATGCCATTTCAAGCAGTAGATTCACTTCCTTGGAAACAGATATAGAACAGTCAACGCAGCCAAGATCAATACAAATTGAAGAAATTTTGAAGATCAAGGAGGAGATGGAAATAAAGAGATCATTTGAGAGCAAACTCAACACAATAAACCAAAGCAACTCAGTTCTGGGATTCCCTTCTACATCACAATCTGCTGCAAATCCAAGTCAAACAACAAGAATTACAAGCCCAGATGCAAGAAGATCAGTTTCAGAAATCACAGGCATATCAAGATTTGGTAACGAAGATCTGTATATGAATTTTAACAGAAAAGTTGAAACTGGGGAATCTTCTGATCTGGGAAACAATGTAAAGCAAGAAAGAGTGAGACAAATTTGGTACCCAATTGCTAAAAGAACAGTCCAATGGTTTGCCAATAGAGAAACAAGGTTTCAAACAGCTGACAACAGACAACAAACAGTAGAAAATGTATAA 1299 38.65 MIRLSLIVFFLFSVFFVVEAQIDSQDPENAAFQPSLGFVIGILAVMFLLTFILLVYAKFCHRRSSVRGDDVNLPRQIRSSSRLSGLDKTVIESLPFFRFSTLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHASCPLCRQRVGSEDLKLLATSNSMRFLLSNLSELKQDSNIELFVQREEEEQRQILHGSSRFSIGRSFRKILRSDKEEEMLIQKACGDGDEDMKNLHRHNHKIIVSDFVFMNRWSNVSSSDLMFLNKEMMDAISSSRFTSLETDIEQSTQPRSIQIEEILKIKEEMEIKRSFESKLNTINQSNSVLGFPSTSQSAANPSQTTRITSPDARRSVSEITGISRFGNEDLYMNFNRKVETGESSDLGNNVKQERVRQIWYPIAKRTVQWFANRETRFQTADNRQQTVENV 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13854480 13855778 - CcPI632755_06g010080.1 Cco06g1008 181608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1008 432 FunFam RING-H2 finger protein ATL43 86 160 - -
Cco06g1008 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Cco06g1008 432 Pfam Ring finger domain 110 153 IPR001841 -
Cco06g1008 432 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Cco06g1008 432 SMART ring_2 111 152 IPR001841 -
Cco06g1008 432 CDD RING-H2_EL5-like 110 153 - -
Cco06g1008 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 416 - -
Cco06g1008 432 SUPERFAMILY RING/U-box 91 157 - -
Cco06g1008 432 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1008 Cco-Chr6:13854480 Cco09g1187 Cco-Chr9:11805039 2.10E-22 dispersed
Cco06g1008 Cco-Chr6:13854480 Cco06g1009 Cco-Chr6:13856825 4.30E-28 tandem
Cco06g0010 Cco-Chr6:127305 Cco06g1008 Cco-Chr6:13854480 1.40E-17 transposed
Cco06g1587 Cco-Chr6:26433650 Cco06g1008 Cco-Chr6:13854480 2.70E-42 transposed
Cco08g0239 Cco-Chr8:4158530 Cco06g1008 Cco-Chr6:13854480 5.70E-12 transposed
Cco10g0643 Cco-Chr10:8887994 Cco06g1008 Cco-Chr6:13854480 1.20E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1008 K10664 - csv:105436309 516.153