Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1024 ATGGAGACTGAGTCTAGAATTTTAAACCCATCTCCGCCGCCGTCGCCGTCATCATCTGGAAGTTTATCCAGGGTACCCGATCATCACCCGTCGTCGTCCTCGGCGGCGGTCGAGTCGAACCGGAAACGAGCGAAACGGCCGAGAGAAAATAACAACAACAATAGTAAACACCCGGTTTTCCGTGGGGTCCGAATGAGGGCTTGGGGAAAGTGGGTTTCCGAAATTCGTGAACCCCGAAAAAAAAGCCGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCTCACGATGTCGCCGCCCTCACCATTAAAGGCACCGCCGCCATTCTCAACTTCCCTGAACTCGCCCATCACTTCCCCCGCCCCGCCTCCTCCTCCCCCCGCGACGTTCAGGCCGCCGCCGCCAAAGCCGCCGCCATGGAAATCCCAACTCCCTCACTTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCGCCTTGTGTCCATCCTCGCCGGAGGAACTGAGTGAAATCGTGGAACTCCCGAGTTTAGGAACGAGTTACGAAACAGCCGAGTTAGGAAACGAGTTCGTATTCGTGGACTCAGTGGAAGGCTGGCTTTATTCTTACCCATGGTATAACAGAGTCAATAATGCAGATCACCAAGTACAAGAGGATTATGGATTCTTCAAAGAACAGATTTTAATGGCGGATTATACAGACACTTTAATTCCATCTTCAACTTTCGAAGCTTTCTTATGGCAAAATTAA 768 52.73 METESRILNPSPPPSPSSSGSLSRVPDHHPSSSSAAVESNRKRAKRPRENNNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGTAAILNFPELAHHFPRPASSSPRDVQAAAAKAAAMEIPTPSLSSSSSSSSSSSSSSALCPSSPEELSEIVELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYNRVNNADHQVQEDYGFFKEQILMADYTDTLIPSSTFEAFLWQN 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14163526 14164293 + CcPI632755_06g010240.1 Cco06g1024 181624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1024 255 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1024 255 FunFam Ethylene-responsive transcription factor 2 58 117 - -
Cco06g1024 255 Pfam AP2 domain 58 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1024 255 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1024 255 MobiDBLite consensus disorder prediction 1 61 - -
Cco06g1024 255 SUPERFAMILY DNA-binding domain 59 117 IPR016177 GO:0003677(InterPro)
Cco06g1024 255 SMART rav1_2 59 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1024 255 MobiDBLite consensus disorder prediction 20 38 - -
Cco06g1024 255 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1024 255 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1024 255 MobiDBLite consensus disorder prediction 123 169 - -
Cco06g1024 255 CDD AP2 60 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1024 255 MobiDBLite consensus disorder prediction 146 169 - -
Cco06g1024 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 43 200 IPR051032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1024 Cco-Chr6:14163526 Cco11g1567 Cco-Chr11:28561775 8.30E-48 dispersed
Cco10g0252 Cco-Chr10:2726744 Cco06g1024 Cco-Chr6:14163526 7.70E-37 transposed
Cco11g0247 Cco-Chr11:2394036 Cco06g1024 Cco-Chr6:14163526 2.70E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59498 PF00847 AP2 3.00E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1024 K09286 - csv:101219745 372.089