Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1045 ATGGGCAAAACCGATTCAATCAATGGTTTCTCTGATCTTGTTCAATATCCAGATTTCTCCCACTATGTGGAAATTGATCCCACTGGCAGATATGGAAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCATTTGACGAGTATGAAGGGATTGAAGTTGCTTGGAACCAAGTCAAACTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTCTTGAAAACATTGAAACATAAGAACATTATGAAATTCTATACTTCTTGGGTCGATACTGCAAATAAGAACATCAACTTTGTAACTGAAATGTTCACTTCTGGGACTTTGAGGCAGTATAGGCTAAAGCATAGGAGAGTTAACATTAGAGCAGTGAAGAGATGGTGTAGACAAATTTTGAGGGGTCTTCACTATCTCCATAGCCAAGACCCCCCTGTGATCCACAGAGATCTCAAGTGTGACAACATTTTTGTTAATGGTAACCAAGGAGAAATTAAAATTGGAGACCTTGGTCTTGCTGCTATCCTCCGGAAATCACATGCTGATCATTGTGTCGGGACACCAGAATTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACGTTTGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGGAAAAAACCAGCTGCCTTGTATAAAGTGAAGGACCCGAGCATGCGTCAATTCGTCGAGAAATGCTTGGCCCCAGTCTCTTGTAGACTTTCAGCAAGGGAGCTTTTGAGTGACCCTTTTCTCCAAATTGATGATTGTGGAAGCAAGCCAAAAATTTCAGATTCTCAGGGAGAACTGGACGATTTTGCTTCCACAGCACACCCTTTCCTTGAACAAGAAAAAATATTTAACTCAATTAGTTACAGTATAGAGGCCTCAGATGAATGGAGGTGCCGTACAGTTCAGAAGGAATCGGATGGGATTGAACTTTTTGAGGACAATGATAATGACCAATTGGAAAATCTTGATAACAGTATTAAGGGGAAGATAAGAGAAGATGGCAATATTGTTTTAAGACTTAGGATTGCAGATAAAGAAGGACATATTCGGAACATATATTTCCCATTTGACACCAAGAATGATACAGCATTAACAGTAGCCACCGAAATGATCGCAGAACTTGATATTACTGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATTGCTTCCTTGGTACTCGACTGGAAGCCAGGGCCTGGCATTGACGAAACACCCCGTATCTCTTACGATGGTGGCTCTCAAAGCTATAACGTCTCTAATCAACCATCTGTTAATTCTTTAACAGAGAGTAAACAAAATGGACCAAAACTCTATCAGATTTTAAACTGCAGCACAGAGCAGTTCTTCCTCAAAGCAGATCAGCCTACACAGTCTGTAGTAGAGAGCATACCAAAAGTGTCAAGCCAGCACTATCAGTCAAACTCTGTCCTCCATGAAAACCAAGCTCCTAGTTCTCATAGTTTTAGGCAAAGACATTCTGATGAAAATTACAAGAAAACTGACCAATCAGTTGGATATAACAAAGAAAAAGTACCAGATAACAAAGCCACTGTCATTGATAGAACTTCACTAAGAAGCTTATTGGGTTCCCGATCGCTGTCCACGAGCCCCTCTACATTGCGACAAGCAATAGAGGATGCAGCTGAAAACACGGTTTTTATTGGACAAGACTGA 1809 40.08 MGKTDSINGFSDLVQYPDFSHYVEIDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANKNINFVTEMFTSGTLRQYRLKHRRVNIRAVKRWCRQILRGLHYLHSQDPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPAALYKVKDPSMRQFVEKCLAPVSCRLSARELLSDPFLQIDDCGSKPKISDSQGELDDFASTAHPFLEQEKIFNSISYSIEASDEWRCRTVQKESDGIELFEDNDNDQLENLDNSIKGKIREDGNIVLRLRIADKEGHIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEIASLVLDWKPGPGIDETPRISYDGGSQSYNVSNQPSVNSLTESKQNGPKLYQILNCSTEQFFLKADQPTQSVVESIPKVSSQHYQSNSVLHENQAPSSHSFRQRHSDENYKKTDQSVGYNKEKVPDNKATVIDRTSLRSLLGSRSLSTSPSTLRQAIEDAAENTVFIGQD 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14725954 14728743 - CcPI632755_06g010450.1 Cco06g1045 181645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1045 602 MobiDBLite consensus disorder prediction 515 532 - -
Cco06g1045 602 ProSiteProfiles Protein kinase domain profile. 32 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1045 602 SMART serkin_6 32 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1045 602 FunFam probable serine/threonine-protein kinase WNK9 115 294 - -
Cco06g1045 602 CDD STKc_WNK 30 289 - -
Cco06g1045 602 Gene3D - 375 438 - -
Cco06g1045 602 MobiDBLite consensus disorder prediction 533 554 - -
Cco06g1045 602 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 377 433 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cco06g1045 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1045 602 Gene3D Transferase(Phosphotransferase) domain 1 115 294 - -
Cco06g1045 602 Pfam Protein kinase domain 35 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1045 602 SUPERFAMILY Protein kinase-like (PK-like) 35 290 IPR011009 -
Cco06g1045 602 MobiDBLite consensus disorder prediction 515 554 - -
Cco06g1045 602 FunFam Probable serine/threonine-protein kinase WNK1 17 113 - -
Cco06g1045 602 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 21 556 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cco06g1045 602 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0819 Cco-Chr4:23539503 Cco06g1045 Cco-Chr6:14725954 5.20E-117 dispersed
Cco06g0628 Cco-Chr6:6951084 Cco06g1045 Cco-Chr6:14725954 4.70E-184 dispersed
Cco06g1045 Cco-Chr6:14725954 Cco10g0444 Cco-Chr10:5243342 5.80E-100 dispersed
Cco06g1045 Cco-Chr6:14725954 Cco02g1766 Cco-Chr2:30431794 3.10E-202 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86920 PF00069 Pkinase 9.20E-50 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1045 K08867 - csv:101222641 982.63