Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1045 | ATGGGCAAAACCGATTCAATCAATGGTTTCTCTGATCTTGTTCAATATCCAGATTTCTCCCACTATGTGGAAATTGATCCCACTGGCAGATATGGAAGATACAATGAAATCCTCGGCAAAGGAGCTTCCAAGACAGTTTACAGAGCATTTGACGAGTATGAAGGGATTGAAGTTGCTTGGAACCAAGTCAAACTCTGTAACTTCCTTCAATGCCCTGAAGATCTTGAGAGGCTATACTCTGAGATTCATCTCTTGAAAACATTGAAACATAAGAACATTATGAAATTCTATACTTCTTGGGTCGATACTGCAAATAAGAACATCAACTTTGTAACTGAAATGTTCACTTCTGGGACTTTGAGGCAGTATAGGCTAAAGCATAGGAGAGTTAACATTAGAGCAGTGAAGAGATGGTGTAGACAAATTTTGAGGGGTCTTCACTATCTCCATAGCCAAGACCCCCCTGTGATCCACAGAGATCTCAAGTGTGACAACATTTTTGTTAATGGTAACCAAGGAGAAATTAAAATTGGAGACCTTGGTCTTGCTGCTATCCTCCGGAAATCACATGCTGATCATTGTGTCGGGACACCAGAATTCATGGCTCCTGAAGTATATGAAGAGGCATATAATGAATTGGTAGACATTTATTCTTTTGGGATGTGTGTTTTGGAGATGGTTACGTTTGAATATCCATATAGTGAATGTAATCATCCTGTTCAAATCTATAAGAAAGTAATTTCTGGGAAAAAACCAGCTGCCTTGTATAAAGTGAAGGACCCGAGCATGCGTCAATTCGTCGAGAAATGCTTGGCCCCAGTCTCTTGTAGACTTTCAGCAAGGGAGCTTTTGAGTGACCCTTTTCTCCAAATTGATGATTGTGGAAGCAAGCCAAAAATTTCAGATTCTCAGGGAGAACTGGACGATTTTGCTTCCACAGCACACCCTTTCCTTGAACAAGAAAAAATATTTAACTCAATTAGTTACAGTATAGAGGCCTCAGATGAATGGAGGTGCCGTACAGTTCAGAAGGAATCGGATGGGATTGAACTTTTTGAGGACAATGATAATGACCAATTGGAAAATCTTGATAACAGTATTAAGGGGAAGATAAGAGAAGATGGCAATATTGTTTTAAGACTTAGGATTGCAGATAAAGAAGGACATATTCGGAACATATATTTCCCATTTGACACCAAGAATGATACAGCATTAACAGTAGCCACCGAAATGATCGCAGAACTTGATATTACTGACCAAGATGTGATCAAGATAGCTGAAAAAATTGATGGGGAAATTGCTTCCTTGGTACTCGACTGGAAGCCAGGGCCTGGCATTGACGAAACACCCCGTATCTCTTACGATGGTGGCTCTCAAAGCTATAACGTCTCTAATCAACCATCTGTTAATTCTTTAACAGAGAGTAAACAAAATGGACCAAAACTCTATCAGATTTTAAACTGCAGCACAGAGCAGTTCTTCCTCAAAGCAGATCAGCCTACACAGTCTGTAGTAGAGAGCATACCAAAAGTGTCAAGCCAGCACTATCAGTCAAACTCTGTCCTCCATGAAAACCAAGCTCCTAGTTCTCATAGTTTTAGGCAAAGACATTCTGATGAAAATTACAAGAAAACTGACCAATCAGTTGGATATAACAAAGAAAAAGTACCAGATAACAAAGCCACTGTCATTGATAGAACTTCACTAAGAAGCTTATTGGGTTCCCGATCGCTGTCCACGAGCCCCTCTACATTGCGACAAGCAATAGAGGATGCAGCTGAAAACACGGTTTTTATTGGACAAGACTGA | 1809 | 40.08 | MGKTDSINGFSDLVQYPDFSHYVEIDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLCNFLQCPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANKNINFVTEMFTSGTLRQYRLKHRRVNIRAVKRWCRQILRGLHYLHSQDPPVIHRDLKCDNIFVNGNQGEIKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPVQIYKKVISGKKPAALYKVKDPSMRQFVEKCLAPVSCRLSARELLSDPFLQIDDCGSKPKISDSQGELDDFASTAHPFLEQEKIFNSISYSIEASDEWRCRTVQKESDGIELFEDNDNDQLENLDNSIKGKIREDGNIVLRLRIADKEGHIRNIYFPFDTKNDTALTVATEMIAELDITDQDVIKIAEKIDGEIASLVLDWKPGPGIDETPRISYDGGSQSYNVSNQPSVNSLTESKQNGPKLYQILNCSTEQFFLKADQPTQSVVESIPKVSSQHYQSNSVLHENQAPSSHSFRQRHSDENYKKTDQSVGYNKEKVPDNKATVIDRTSLRSLLGSRSLSTSPSTLRQAIEDAAENTVFIGQD | 602 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 14725954 | 14728743 | - | CcPI632755_06g010450.1 | Cco06g1045 | 181645 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1045 | 602 | MobiDBLite | consensus disorder prediction | 515 | 532 | - | - | |
Cco06g1045 | 602 | ProSiteProfiles | Protein kinase domain profile. | 32 | 289 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1045 | 602 | SMART | serkin_6 | 32 | 289 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1045 | 602 | FunFam | probable serine/threonine-protein kinase WNK9 | 115 | 294 | - | - | |
Cco06g1045 | 602 | CDD | STKc_WNK | 30 | 289 | - | - | |
Cco06g1045 | 602 | Gene3D | - | 375 | 438 | - | - | |
Cco06g1045 | 602 | MobiDBLite | consensus disorder prediction | 533 | 554 | - | - | |
Cco06g1045 | 602 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 377 | 433 | IPR024678 | GO:0004674(InterPro)|GO:0005524(InterPro) | |
Cco06g1045 | 602 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 156 | 168 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g1045 | 602 | Gene3D | Transferase(Phosphotransferase) domain 1 | 115 | 294 | - | - | |
Cco06g1045 | 602 | Pfam | Protein kinase domain | 35 | 289 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1045 | 602 | SUPERFAMILY | Protein kinase-like (PK-like) | 35 | 290 | IPR011009 | - | |
Cco06g1045 | 602 | MobiDBLite | consensus disorder prediction | 515 | 554 | - | - | |
Cco06g1045 | 602 | FunFam | Probable serine/threonine-protein kinase WNK1 | 17 | 113 | - | - | |
Cco06g1045 | 602 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 21 | 556 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Cco06g1045 | 602 | Gene3D | Phosphorylase Kinase; domain 1 | 18 | 113 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g0819 | Cco-Chr4:23539503 | Cco06g1045 | Cco-Chr6:14725954 | 5.20E-117 | dispersed | |
Cco06g0628 | Cco-Chr6:6951084 | Cco06g1045 | Cco-Chr6:14725954 | 4.70E-184 | dispersed | |
Cco06g1045 | Cco-Chr6:14725954 | Cco10g0444 | Cco-Chr10:5243342 | 5.80E-100 | dispersed | |
Cco06g1045 | Cco-Chr6:14725954 | Cco02g1766 | Cco-Chr2:30431794 | 3.10E-202 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86920 | PF00069 | Pkinase | 9.20E-50 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1045 | K08867 | - | csv:101222641 | 982.63 |