Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1090 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAACGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCCGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTTTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGTGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGATAATGAGCACCAAGAAGGGAACTGAGTGGGCTGAACAAACATTCAACACGTGA 1956 44.38 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGFTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARWQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEIMSTKKGTEWAEQTFNT 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16445464 16448919 + CcPI632755_06g010900.1 Cco06g1090 181690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1090 651 MobiDBLite consensus disorder prediction 382 421 - -
Cco06g1090 651 Gene3D - 59 114 - -
Cco06g1090 651 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 637 IPR047242 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
Cco06g1090 651 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cco06g1090 651 Coils Coil 167 187 - -
Cco06g1090 651 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cco06g1090 651 MobiDBLite consensus disorder prediction 597 612 - -
Cco06g1090 651 MobiDBLite consensus disorder prediction 157 176 - -
Cco06g1090 651 MobiDBLite consensus disorder prediction 213 234 - -
Cco06g1090 651 FunFam CDC5 cell division cycle 5-like 5 59 - -
Cco06g1090 651 SMART sant 58 105 IPR001005 -
Cco06g1090 651 SMART sant 6 55 IPR001005 -
Cco06g1090 651 MobiDBLite consensus disorder prediction 400 414 - -
Cco06g1090 651 Pfam pre-mRNA splicing factor component 407 634 IPR021786 -
Cco06g1090 651 CDD SANT 10 53 IPR001005 -
Cco06g1090 651 FunFam CDC5 cell division cycle 5-like 60 120 - -
Cco06g1090 651 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cco06g1090 651 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cco06g1090 651 MobiDBLite consensus disorder prediction 597 621 - -
Cco06g1090 651 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cco06g1090 651 Gene3D - 5 58 - -
Cco06g1090 651 CDD SANT_CDC5_II 55 106 IPR047240 -
Cco06g1090 651 MobiDBLite consensus disorder prediction 110 150 - -
Cco06g1090 651 Pfam Myb-like DNA-binding domain 10 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1090 K12860 - - csv:101205030 1195.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1090 Cco-Chr6:16445464 Cco10g0709 Cco-Chr10:10049465 1.20E-10 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1090 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.4 2.7e-297 1018.1
Cco06g1093 . 252 467 MYB-Related Transcription Factor Family AT1G09770 53.7 7.0e-51 199.5
Cco10g0709 . 202 654 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cco10g0709 . 202 654 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cco06g1090 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.4 2.7e-297 1018.1
Cco06g1093 . 252 467 MYB-Related Transcription Factor Family AT1G09770 53.7 7.0e-51 199.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59501 PF11831 Myb_Cef 5.70E-51 No_clan Cco TF