Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1090 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAACGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCCGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTTTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGTGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGATAATGAGCACCAAGAAGGGAACTGAGTGGGCTGAACAAACATTCAACACGTGA 1956 44.38 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGFTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARWQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEIMSTKKGTEWAEQTFNT 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16445464 16448919 + CcPI632755_06g010900.1 Cco06g1090 181690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1090 651 MobiDBLite consensus disorder prediction 382 421 - -
Cco06g1090 651 Gene3D - 59 114 - -
Cco06g1090 651 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 637 IPR047242 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
Cco06g1090 651 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cco06g1090 651 Coils Coil 167 187 - -
Cco06g1090 651 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cco06g1090 651 MobiDBLite consensus disorder prediction 597 612 - -
Cco06g1090 651 MobiDBLite consensus disorder prediction 157 176 - -
Cco06g1090 651 MobiDBLite consensus disorder prediction 213 234 - -
Cco06g1090 651 FunFam CDC5 cell division cycle 5-like 5 59 - -
Cco06g1090 651 SMART sant 58 105 IPR001005 -
Cco06g1090 651 SMART sant 6 55 IPR001005 -
Cco06g1090 651 MobiDBLite consensus disorder prediction 400 414 - -
Cco06g1090 651 Pfam pre-mRNA splicing factor component 407 634 IPR021786 -
Cco06g1090 651 CDD SANT 10 53 IPR001005 -
Cco06g1090 651 FunFam CDC5 cell division cycle 5-like 60 120 - -
Cco06g1090 651 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cco06g1090 651 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cco06g1090 651 MobiDBLite consensus disorder prediction 597 621 - -
Cco06g1090 651 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cco06g1090 651 Gene3D - 5 58 - -
Cco06g1090 651 CDD SANT_CDC5_II 55 106 IPR047240 -
Cco06g1090 651 MobiDBLite consensus disorder prediction 110 150 - -
Cco06g1090 651 Pfam Myb-like DNA-binding domain 10 70 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1090 Cco-Chr6:16445464 Cco10g0709 Cco-Chr10:10049465 1.20E-10 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59501 PF11831 Myb_Cef 5.70E-51 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1090 K12860 - csv:101205030 1195.26