Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1093 ATGAGAGTCGGAGAGGGCAACACCCTCCTCAAAGTAAGGGTGGAGCGTAACTTGTTCTTTCTCAAGGAGTGTGATGCAGGGTCGAATGTGGTGATTGAGGAAAAGGCGTTACCATGGAGTTTGGGGAAGGAAGTTGATGCCGTATTTGATGTGGTAGAAACGATTGTGGTGAGAAAGGGGAAAGCTTTTGTTGTGTGGTTGGACATGGAGAGGGGTTTGAGAAAATTGTTTGGAGAGAATATTAAGGGAGAATCGAGAGAGGTCTCTAGTCCTAGAAGGAAAGGTGTTGAACACGTCTTTTTGACCTTTGATCCATCAGTGGTTAGCTATTCAGGGGACTATTCCTCCTTGTCCTCTCCAGCTAAAGCTTTTACAGATGGGGTGCAGCTTCTCCTCAGTGGGTTAGAAGACGCTCCTTTCTTCCTTATGGCGGGGGGGAGGGGTCAATGGAGACTTGTAGCCCTTTCCCTAGTGCTCGTTCCAAGAGAGGTTAAGGAGGGAGTGGTGCTTTTGCAAAGCGTGGTTTATGTGAGGAAGGTTTGGTTAAAGTTGGGAATCCTAAGGCATGTGGAGTGGGCGGGTTTGGGACTCAATTGGGGCGTCAAGTGGCATCTTGGTTTTATGGGATGGTTTTCTTTTAGGGCAGTTGATGTTGTTCGTGGGAAATTCACCATCTCGTTGGTTTTTGACTTTCTTAATATAAGGATTTTGAGAAGTAGCCAACTGTTCAATCCTACTCTTGTCGTTTATGTGGCCGATTATTTGATAAAGGAAGAGGCCCAGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAATTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCTTATGGACTTTCGAGCGTTGCTGGAAACCATGAGAAACTAGCGGCCTTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCGCAAATTGAGGCGACTTTCAAGCAGGTAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAACAAGAGATGTCAGCTGCTTCACACAGAATTAGTGGTATCTGGGAAGAGGTTCAAAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTGCGTTATGGAAATCTTTTGGGGGACTTGGAAAAGATGCAGAAAATCATGGTTGATCTCAAAGCACAGGCACAAAAGGAAGAAGAAATTGCAGCGCAGAGCCGTGCTCTTCAGTTGGCTGAGGCTGAGGCTGATCAAACCGTTGGAGAAAATGCTGATAGTTCTGAAGCCATGTCTGCATCAGTAGCAGTTGATTGTGAAAATTCTGTGCCTGTTACCTCAACCTCCAATGAATTAACGGGTGAACAACTGAACTCGTCTGTGGGACATGAACATGAAACTTCTAATGCCATGGATATCGACACAGAAAAAGAAAGTTTACTGGTGAGCTTGGATATTGGTTTATCTGATAACAAACTACCTTCTACAGTGGGAGAGAATGCATCATTGCCTGACAATGGCTTTGAAGATTATGATAAAAGTCAAACCACTGATGTTCCCTCTCAAGAACTCTCGGGTCCTGTTACAAATGGCACTCCAGATGTGACTGTTACAGTGGAAAATAACATCAGCAACGATTCGGTTGATGGTACAGCTATTGAAAATGTTAAATGTAGGACCGATATTGTCGAGGAAGTCAAAGATGCTGAAACTCAACAGTCTGTGACCGAAACTGAAAATAACTCAGATGTGCATTTGACTAATCTGGATTCTGCTGCACCGGCATCTTCTAATGAGGGTAACGGGGAACTCCCTAGTGGCGAAGGAGAAGCAATGCAATCAAATGTCTAG 1950 44.56 MRVGEGNTLLKVRVERNLFFLKECDAGSNVVIEEKALPWSLGKEVDAVFDVVETIVVRKGKAFVVWLDMERGLRKLFGENIKGESREVSSPRRKGVEHVFLTFDPSVVSYSGDYSSLSSPAKAFTDGVQLLLSGLEDAPFFLMAGGRGQWRLVALSLVLVPREVKEGVVLLQSVVYVRKVWLKLGILRHVEWAGLGLNWGVKWHLGFMGWFSFRAVDVVRGKFTISLVFDFLNIRILRSSQLFNPTLVVYVADYLIKEEAQYLCAAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQVDTAATELECFEALQKQEMSAASHRISGIWEEVQKQKELERTLQLRYGNLLGDLEKMQKIMVDLKAQAQKEEEIAAQSRALQLAEAEADQTVGENADSSEAMSASVAVDCENSVPVTSTSNELTGEQLNSSVGHEHETSNAMDIDTEKESLLVSLDIGLSDNKLPSTVGENASLPDNGFEDYDKSQTTDVPSQELSGPVTNGTPDVTVTVENNISNDSVDGTAIENVKCRTDIVEEVKDAETQQSVTETENNSDVHLTNLDSAAPASSNEGNGELPSGEGEAMQSNV 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16456715 16462902 + CcPI632755_06g010930.1 Cco06g1093 181693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1093 649 Coils Coil 416 449 - -
Cco06g1093 649 MobiDBLite consensus disorder prediction 476 503 - -
Cco06g1093 649 MobiDBLite consensus disorder prediction 522 566 - -
Cco06g1093 649 MobiDBLite consensus disorder prediction 601 649 - -
Cco06g1093 649 MobiDBLite consensus disorder prediction 542 566 - -
Cco06g1093 649 MobiDBLite consensus disorder prediction 476 499 - -
Cco06g1093 649 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 251 423 IPR047242 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
Cco06g1093 649 MobiDBLite consensus disorder prediction 606 649 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1093 K12860 - - csv:101206265 588.186
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1090 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.4 2.7e-297 1018.1
Cco06g1093 . 252 467 MYB-Related Transcription Factor Family AT1G09770 53.7 7.0e-51 199.5
Cco10g0709 . 202 654 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cco10g0709 . 202 654 MYB-Related Transcription Factor Family AT3G18100 57.8 4.1e-150 528.9
Cco06g1090 . 1 634 MYB-Related Transcription Factor Family AT1G09770 83.4 2.7e-297 1018.1
Cco06g1093 . 252 467 MYB-Related Transcription Factor Family AT1G09770 53.7 7.0e-51 199.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49