Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1118 ATGAAGGAGGAAGGAGAGTGTTTTGAAGAGCAGCTTGTAATGCAACAATTCCAAACGATGCAGCAAAACGATGACGTTTTTGGAGGAGGAGGGTTTATTTTTCCTGAGGTTTCTCCGTTGATGTTTCCGGCCACAACCGTGCATCAAGTCCACGGCTTCAACCCGTTTTCTAATCCGACGATCCTAGACCACCACGACTCGTTTATCTCGCCGCTGCAACCGCCAACCTCCTATGGCAGTTTCTTCAACAGAAGAAATGCTTCGTCTCTGCAGTTCCCTCCTTACGATAATGTTGGTTGTGCTCCATTTGAGCTGACCAAGATGACCGCTCAAGAAATAATGGACGCCAAAGCACTTGCAGCCTCTAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAACACCACTAAAACCGACAAGGCGTCATTGCTAGCAGAAGTAATCCAACATGTGAAAGAGCTGAAACGACAGACGACGTTGATAGCCGATGTAAGTCTGCTGCCGACGGAGCTGGACGAGCTGTCGGTGGATGTCGATGCGTCCGATGAGGACGGGAAGTCTGTGATCAAAGCCTCGTTTTGTTGTGAGGACAGGTCAGATCTTTTGCCACAAATCATCAAAACCCTAAAATCCCTCCACTTGAGAACTTTAAAAGCAGAGATCACGACGCTCGGCGGCCGCGTAAGAAACGTATTGTTCATCACCAGCGATGCCGACTCCTCCAACGACCAACAAGATCAGGCTCAACAACACCAACATCACCAATACAGCATCAGTTCCATTCAAGAAGCCCTAAAGGGCGTGATGGAAAAGGTTTGTAGCGAAGACCAGTCGTCTTCAGGCAGCATTAAAAGACAAAGGACCAATAATCACAACATCAATATCATCCAACACAGGTCTTTCTAG 951 47.11 MKEEGECFEEQLVMQQFQTMQQNDDVFGGGGFIFPEVSPLMFPATTVHQVHGFNPFSNPTILDHHDSFISPLQPPTSYGSFFNRRNASSLQFPPYDNVGCAPFELTKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTTLIADVSLLPTELDELSVDVDASDEDGKSVIKASFCCEDRSDLLPQIIKTLKSLHLRTLKAEITTLGGRVRNVLFITSDADSSNDQQDQAQQHQHHQYSISSIQEALKGVMEKVCSEDQSSSGSIKRQRTNNHNINIIQHRSF 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17482946 17484049 - CcPI632755_06g011180.1 Cco06g1118 181718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1118 316 SMART finulus 126 175 IPR011598 GO:0046983(InterPro)
Cco06g1118 316 CDD bHLH_AtAIG1_like 115 194 - -
Cco06g1118 316 Pfam Helix-loop-helix DNA-binding domain 123 170 IPR011598 GO:0046983(InterPro)
Cco06g1118 316 PANTHER TRANSCRIPTION FACTOR BHLH30 103 305 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1118 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 174 IPR036638 GO:0046983(InterPro)
Cco06g1118 316 Gene3D - 115 175 IPR036638 GO:0046983(InterPro)
Cco06g1118 316 FunFam transcription factor bHLH30 115 178 - -
Cco06g1118 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2572 Cco-Chr5:33985852 Cco06g1118 Cco-Chr6:17482946 2.40E-69 dispersed
Cco06g1118 Cco-Chr6:17482946 Cco10g1351 Cco-Chr10:26549001 2.70E-40 dispersed
Cco06g1118 Cco-Chr6:17482946 Cco08g1325 Cco-Chr8:25133399 3.70E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59502 PF00010 HLH 2.00E-12 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1118 - - - 0.0