Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1169 ATGGATCACAATCGCTGCAATGGAAACTCTGATTCTCATATCAAAATACCAAAAATCAAGTTCACAAAGCTCTTCATCAATGGACAATTCGTTGACTCAATTTCAGGGAAAACTTTTGAGACCATAGATCCGAGAACCGAGGAGGTTATAACGACGGTCGCCGCTGGGGACAAACAAGACGTTGATTTGGCCGTGAAAGCCGCCCGTGAAGCCTTCGATCATGGCCCTTGGCCCCGCATGTCCGGCGCCGAGAGGGGCAGGATAATGATGAAACTAGCGGATTTGATAGATGAACACATGGAGGAATTAGCAGCGTTGGATACGATCGACGCTGGAAAATCGTTTCTAATGGGAAAGATCGTAGATATACCGGGGGCTGCAAATACGCTACGGTACTACGCAGGAGCAGCGGATAAATTCCACGGCGAAGTATTGAAAATGGCTAAACCGGTTCACGGTTACACGTTACTTGAGCCTATTGGAGTGGTGGGTCACATCATACCGTGGAATTTTCCGACGACCATGTTCTGGTTGAAAGTCAGCCCGGCGTTAGCCGCCGGCTGCACCATGATCGTCAAACCGGCGGAACAAACCCCTCTCTCCGCCCTCTTCTACGCCCATCTCGCCAAATTGGCTGGTATACCAGATGGAGTTCTGAACGTGGTGACTGGATATGGACCGACGGCAGGGTCAGGCATTGCGTCCCACATGGACATTGACAAGGTGAGCTTCACGGGATCAACTAAGGTGGGAAGGCTGGTAATGCAGGCAGCAAGTGCCAGTAATCTGAAGCAAGTGTCCTTGGAATTAGGAGGCAAATCACCCCTTCTAGTCTTTGATGATGCAGATCTGGACAAAGCAGTTGATCTTGCTCTCCTAGCTATTTTTTATAACAAGGGGGAAATTTGCGTGGCTGGCTCCCGGGTTTTGGTTCAAGAAGGGATATACGACGAATTCGTGAAAAAGATTACTGAAAAGGTCAAATCTTGGGTTGTGGGAGACCCTTTTGATCCTAAAGTTAAATATGGACCCCAGGTGGACAAAAAGCAAATGGATAAAATTCTGAAATACATAGAACACGGTAAAAAGGAAGGGGCAACGTTGGTTACTGGCGGCAAGCGTATAGGCGAAGTGGGGTATTACGTTGAGCCCACAATCTTCACAAATGTCAAGGAAGACTCACTAATTGCCCAGGACGAAATATTCGGCCCCGTCCTCTCAGTCATAAAATTCAAGACAATTGAAGACGGAATAAGGAGTGCAAACAACACCAAGTACGGGCTAGCAGCTGGGATAGTGACGAACAACTTAGACATAGCGAACACAGTGTCGAGGTCGATTCGAGCTGGTACGATTTGGATAAATTGTTACTTCGCTTTTGACCCAAGTTGCCCATTTGGTGGGTACAAGGCCAGTGGATTCGGAAGAGACTCTGGAATGCACGCTATCCAAAAGTATCTTCAAACTAAATCTGTTGTCATTCCTTTGGTTAACACTCCTTGGCTTTGA 1509 47.51 MDHNRCNGNSDSHIKIPKIKFTKLFINGQFVDSISGKTFETIDPRTEEVITTVAAGDKQDVDLAVKAAREAFDHGPWPRMSGAERGRIMMKLADLIDEHMEELAALDTIDAGKSFLMGKIVDIPGAANTLRYYAGAADKFHGEVLKMAKPVHGYTLLEPIGVVGHIIPWNFPTTMFWLKVSPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGYGPTAGSGIASHMDIDKVSFTGSTKVGRLVMQAASASNLKQVSLELGGKSPLLVFDDADLDKAVDLALLAIFYNKGEICVAGSRVLVQEGIYDEFVKKITEKVKSWVVGDPFDPKVKYGPQVDKKQMDKILKYIEHGKKEGATLVTGGKRIGEVGYYVEPTIFTNVKEDSLIAQDEIFGPVLSVIKFKTIEDGIRSANNTKYGLAAGIVTNNLDIANTVSRSIRAGTIWINCYFAFDPSCPFGGYKASGFGRDSGMHAIQKYLQTKSVVIPLVNTPWL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20784425 20788065 + CcPI632755_06g011690.1 Cco06g1169 181769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1169 502 FunFam Aldehyde dehydrogenase3 272 461 - -
Cco06g1169 502 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 296 307 IPR016160 GO:0016491(InterPro)
Cco06g1169 502 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 268 275 IPR029510 GO:0016491(InterPro)
Cco06g1169 502 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 22 494 - GO:0004029(PANTHER)
Cco06g1169 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 461 IPR016163 GO:0016620(InterPro)
Cco06g1169 502 FunFam Aldehyde dehydrogenase, putative 464 490 - -
Cco06g1169 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 490 IPR016162 GO:0016491(InterPro)
Cco06g1169 502 SUPERFAMILY ALDH-like 16 498 IPR016161 GO:0016491(InterPro)
Cco06g1169 502 Pfam Aldehyde dehydrogenase family 30 492 IPR015590 GO:0016491(InterPro)
Cco06g1169 502 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 26 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2007 Cco-Chr2:33017619 Cco06g1169 Cco-Chr6:20784425 8.60E-73 dispersed
Cco06g0462 Cco-Chr6:5080864 Cco06g1169 Cco-Chr6:20784425 5.20E-56 dispersed
Cco06g1169 Cco-Chr6:20784425 Cco06g1894 Cco-Chr6:29133337 7.60E-162 dispersed
Cco06g1169 Cco-Chr6:20784425 Cco06g1872 Cco-Chr6:28937996 4.40E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1169 K12355 - csv:101219029 915.605