Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1175 ATGGGTTCACCAAAAACTGGTCAACATGTGAGCTTTAATGCTCCGAGGCCATTTGGGCACAGGCTGAAATCGGATATGAAAGAGACGTTTTTCCCTGACGATCCGTTCAGACAGTTTCGAAATGAAAGAGGCGCAATACAAAGAGTGAAAAAGGGGTTCCAATATTTCATACCCATATTGGAATGGTTTCCTAAATACAATTTGAATATGTTTAAGTATGATTTGCTTGCTGGTATTACCATTACCAGCCTTGCTATTCCTCAAGGCATTAGTTATGCCAAACTCGCCGTCCTCCCTCCCATTATCGGCCTCTATTCGAGCTTCGTTCCGCCGATTGTGTACGCAGTGTTTGGAAGCTCAAAGCATCTGGCGGTGGGAACGGTGGCTGCATGTTCGTTGCTGATATCAGAAATTATTGGAGAAGTGGCTTCACCGGAAGAGGAACCCACATTGTATCTCCACTTGGTTTTCACCGCCACTTTTATCACCGGAATCATGCAGGCTGCATTAGGCTTTCTAAGATTGGGAATTTTGGTGGATTTCTTATCGCACTCAACAATCCTTGGGTTTATGGGAGGAACGGCTGTGATCATTTCCCTTCAACAACTGAAAGGCATATTTGGACTCACTCATTTCACCTCTAAAACTGACGTTTATTCTGTACTTCATGCCGTTTTCTCCCTTAGAAAAGAGTGGAAATGGCAAAGTGCTGTGGTGGGCATCGTTTTCCTTGTATTCCTCCAGTTTACTCGCTACTTGAGAAACAGAAACCCGAAGCTATTTTGGGTGTCAGCGATGGCTCCCATGGTGACTGTAATAATAGGGTGTTTGTTTGCATATTTCATCAATGGAACTCAGCATGGAATCTTAACTGTGGGTCATTTGAGCAAAGGAATAAACCCTCTTTCTGTTCACTTCTTGAACTTTGACTCCAAATATCTACCAGCTGTAGTACAAGCTGGGTTGATCACTGGCCTTGTCGCTATGGCGGAAGGAATAGCAATTGGTCGGAGCTTTGCAATTATGAAAAATGAACAAATCGATGGCAATAAGGAGATGATAGCTTTTGGTTTGATGAACATAGTGGGATCTTTCACTTCCTGCTATTTAACCACTGGGCCATTCTCAAAGACTGCAGTGAACTTCAATGCTGGGTGTAGAACAGCAATGTCAAACTTAGTTATGGCAATCTTCATGGCTCTCACCCTCCTCTTTCTAGCTCCTCTCTTTAGCTACACACCTCTTGTTGCCCTTTCCGCCATTATCATGTCTGCCATGCTTGGTCTCATCAAATATGAAGAAATGTATCATCTTCTCAAAGTTGACAAATTTGATTTTTGCATTTGTATGGCGGCTTTCTTGGGTGTTGCCTTCTTAAGCATGGATGTTGGCATCATGCTTTCGGTGGGACTTGCTTTACTGAGAGCTCTTCTGTACATGGCTAGACCAGCTACTTGCAAGCTCGGGAAAATACCAAACTCCAGTTTGTACAGAGATGTGGAGCAGTATCCTAATGCAACCAGAGCCCATGGAATTATGGTTCTTCAACTTGGTTCCCCTATTTATTATGCCAACTCCAACTACATCAGAGAAAGGATTTTCAGATGGGTTCGTGATGAGCTAGTGGACTCAAAAGATGGATCCGTCGAACATGTACTCTTAGAGTTGAGCGGAGTTACCTCAATCGACATGACAGGGATTGAAACTCTAGTCGAAATCCATAGATCATTACAAGCAAACGGAATTCAGATGGGAATTGTAAACCCAAGAATTGTAGTGATGGAGAAGATGATTGCTTCGGAATTCACAGACACGATCGGGAAAGAGAACATCTATTTGTCGGTAGACGAAGGAGTGGAAAGGTGTAGAGATTTGGTTCCAAAATTAAAGAAAACAGAAACAAATGATCGAAGCTCGAACATGACGACAACGAAGCAACAAGTTTAA 1947 42.94 MGSPKTGQHVSFNAPRPFGHRLKSDMKETFFPDDPFRQFRNERGAIQRVKKGFQYFIPILEWFPKYNLNMFKYDLLAGITITSLAIPQGISYAKLAVLPPIIGLYSSFVPPIVYAVFGSSKHLAVGTVAACSLLISEIIGEVASPEEEPTLYLHLVFTATFITGIMQAALGFLRLGILVDFLSHSTILGFMGGTAVIISLQQLKGIFGLTHFTSKTDVYSVLHAVFSLRKEWKWQSAVVGIVFLVFLQFTRYLRNRNPKLFWVSAMAPMVTVIIGCLFAYFINGTQHGILTVGHLSKGINPLSVHFLNFDSKYLPAVVQAGLITGLVAMAEGIAIGRSFAIMKNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNLVMAIFMALTLLFLAPLFSYTPLVALSAIIMSAMLGLIKYEEMYHLLKVDKFDFCICMAAFLGVAFLSMDVGIMLSVGLALLRALLYMARPATCKLGKIPNSSLYRDVEQYPNATRAHGIMVLQLGSPIYYANSNYIRERIFRWVRDELVDSKDGSVEHVLLELSGVTSIDMTGIETLVEIHRSLQANGIQMGIVNPRIVVMEKMIASEFTDTIGKENIYLSVDEGVERCRDLVPKLKKTETNDRSSNMTTTKQQV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20996208 20999180 + CcPI632755_06g011750.1 Cco06g1175 181775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1175 648 CDD STAS_SulP_like_sulfate_transporter 503 615 - -
Cco06g1175 648 ProSiteProfiles STAS domain profile. 502 622 IPR002645 -
Cco06g1175 648 SUPERFAMILY SpoIIaa-like 505 623 IPR036513 -
Cco06g1175 648 NCBIfam sulfate permease 58 617 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco06g1175 648 ProSitePatterns SLC26A transporters signature. 100 121 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cco06g1175 648 Gene3D STAS domain 482 625 IPR036513 -
Cco06g1175 648 FunFam Sulfate transporter 31 482 624 - -
Cco06g1175 648 Pfam Sulfate permease family 71 452 IPR011547 GO:0016020(InterPro)
Cco06g1175 648 Pfam STAS domain 503 617 IPR002645 -
Cco06g1175 648 PANTHER SULFATE TRANSPORTER 45 623 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0575 Cco-Chr5:4694061 Cco06g1175 Cco-Chr6:20996208 3.10E-200 dispersed
Cco06g1175 Cco-Chr6:20996208 Cco09g0702 Cco-Chr9:6307169 2.20E-201 dispersed
Cco06g1175 Cco-Chr6:20996208 Cco06g1177 Cco-Chr6:21020202 0.00E+00 proximal
Cco06g1175 Cco-Chr6:20996208 Cco09g0216 Cco-Chr9:1916017 5.80E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1175 K17471 - csv:116402148 1157.9