Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1179 ATGAATCCTAAATCCCATTTCAACCCTCTTTTCCAGTTCTCTCTCCTCCTCCTCCTCCTCCGCCTCTCCGCCGCCCTCCCCTCCGTCGGCCATGGCAGCCTCTCCGACGCCGAAGCTCTCTTCATCCGCCACCGCCAGCTTCTTTACTACAGAGACGAGTGGGGTGACCGTGGGGAACAACTCACTGTCGACCCATCTCTTATTTTCGAAAATGAGAGAATTAGAAATGCTTACATTGCACTTCAAGCTTGGAAACTAGCCATTTTGTCAGACCCTCTTAATCAAACCGCCAATTGGGTCGGATCTAATGTCTGCAGCTACTTCGGCGTTTTCTGTGCTCCCGCATTGGACAACCCCAAAATCCGTACCGTCGCCGGAATCGATCTCAACCACGGCGACATTGCCGGATACCTCCCTGAAGAGCTCGGTTTGCTTACCGATCTTGCATTGTTCCACATCAACTCTAACAGATTCTGTGGTACTTTACCCCACAAATTCGACCGTCTCAAGTTGCTTTACGAATTGGATCTCAGTAATAACCGCTTCGCCGGCAAGTTCCCCGACGTCGTTCTCAGGCTTCCGACGCTCAAGTTCTTGGATCTGAGGTTTAATGAATTTGAAGGGAATGTACCTAGAGAGCTGTTCGACAAGGATTTGGACGCTATTTTTATTAACCACAACAGGTTTCGATTCGAACTGCCGGATAATTTTGGGAACTCGCCGGTGTCGGTGATTGTGCTTGCGAACAATAAGTTCCATGGATGTGTGCCTTCGAGCTTGGGGAATATGACGAGGCTGAATGAGATTATTCTGATGAATAATGGGCTTAATTCTTGCTTGCCGCCGGAAATTGGGGCGTTGAAGAACTTGACGGTGTTTGATGTTAGTTCGAATAAGTTGGTGGGTCCGTTGCCGGAGAGTTTTGGAGGGCTTGTGAGTTTGGAGCAACTTAATGTGGCGAATAATTTTCTTTCTGGGAAGATTCCGGAGAGTATTTGTAAGTTGCCTAAGCTTCAGAACTTTACGTTCTCGAATAACTTCTTCTCCGGTGAGCCACCGGTATGTTTGAGGCTTCCGGATTTCAGTGATCGGAGGAATTGCTTGGCTGGAAGGCCCGGGCAGCGGTCGACTGGGCAATGTAGGACGTTCTTGTCGAGACCTGTTGATTGTAATGCGTTTAAATGCGGTGGTTCATCTTCTGGTTCGCCTTCTACTCCATTTACTCCGCCGGTGGTTTCGCCCTCTTCGCCTCCGTCACCGGCAGGGGCGGCGTCTCCTTCATCGCCGTCTCATTCTCCCAATGCACCACCGGCGCCGCCGCTCTCGCCCCATTTTCCTCCTCTGTCGCCACAATCGCCACCTTCGCCGCCTTCTTCCCCATCTACGCCGTCGCAGCCGTCGACACCGTCGTCGCCTTCTTCCCCATCGACGCCGTCACAGCCGTCGACACCGCCGTCGCCTTCTTCTCCATCTACCCCTTCAACTCCTTCCACCCCGCCCCATTTTCCCTCTCCATCGGCGCCGTCGCCTTCATCTCCGCCTCGAGGTCATGCTCCCCCGTCATTACCGTCACCTTCATCGCCCCCACAAGGCCATACTCCGCCGTCTGAGCCCTCACCATCATCACCACCCCACGGCCATACTCCGCCGGGTCCACCTTCGTCTGAGCCCTCGCCACCATCGCCGTCACAAGGTCACACTCCGTCGGCTCCTCCTTCTACGTCCGAGCCCTCACCACCATCGCCGCCACAAGGTCACACTCCGCCGGCTCCTCCTTCGCCGTCCGAGCCGTCGCCTTCATCCCCGCCACATGTTAACACTCCGGCCATTCCCCCTTCGCCATCCGAGCCATCACCTTCCTCACCCCCTCAAGGCCATGTTCCTCCGACGGAGCCTTCTCCTCCAGGAACATCATCATCACCAGCACCACCATTCCCAGTTTACACTCCGCCTCCGCCACAGTTCCCTGATTTCCCTTCGCCACCATCTACCCAACCTCCGGTCTACTGCCCACGATCCCCATATCCACCATCTCCTCCATCCTACTCCCCAAACCCACCTCTCAATCACCCCAACTCTCCGCCGCCACCCCCGCTACCAGTTTATCCTCCCCCTCCCCCTGTTCATACAACCCCGTCGCCGCTTCCTCTTCCATGCATACAACCTCCCCCACCAAATGTTAAATATTCAGGACCGCCGCCCCCTCCACCAACACCTTCATCTCCAATTCACTATAATCCCCCACCACCGCCGGTCCATTACCAAGCTCCTCCCTCACCTTCACCACCGGTCAGGGTTTATCCGCCGCCGTCCCCAACTCCCCCACCTCCAGTGGTTTACGAAAGCCCGCCACCGCCAGTCGTCTACCAAAGCCCACCCCCGCCTCCAACTCCAGTATACGGAGGTCCACTGCCACCAATCTACGGAGTTCCGTACGCCTCTCCTCCGCCACCACCCTTCTACTAA 2466 55.56 MNPKSHFNPLFQFSLLLLLLRLSAALPSVGHGSLSDAEALFIRHRQLLYYRDEWGDRGEQLTVDPSLIFENERIRNAYIALQAWKLAILSDPLNQTANWVGSNVCSYFGVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTLPHKFDRLKLLYELDLSNNRFAGKFPDVVLRLPTLKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCVPSSLGNMTRLNEIILMNNGLNSCLPPEIGALKNLTVFDVSSNKLVGPLPESFGGLVSLEQLNVANNFLSGKIPESICKLPKLQNFTFSNNFFSGEPPVCLRLPDFSDRRNCLAGRPGQRSTGQCRTFLSRPVDCNAFKCGGSSSGSPSTPFTPPVVSPSSPPSPAGAASPSSPSHSPNAPPAPPLSPHFPPLSPQSPPSPPSSPSTPSQPSTPSSPSSPSTPSQPSTPPSPSSPSTPSTPSTPPHFPSPSAPSPSSPPRGHAPPSLPSPSSPPQGHTPPSEPSPSSPPHGHTPPGPPSSEPSPPSPSQGHTPSAPPSTSEPSPPSPPQGHTPPAPPSPSEPSPSSPPHVNTPAIPPSPSEPSPSSPPQGHVPPTEPSPPGTSSSPAPPFPVYTPPPPQFPDFPSPPSTQPPVYCPRSPYPPSPPSYSPNPPLNHPNSPPPPPLPVYPPPPPVHTTPSPLPLPCIQPPPPNVKYSGPPPPPPTPSSPIHYNPPPPPVHYQAPPSPSPPVRVYPPPSPTPPPPVVYESPPPPVVYQSPPPPPTPVYGGPLPPIYGVPYASPPPPPFY 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21068478 21070943 + CcPI632755_06g011790.1 Cco06g1179 181779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1179 821 SUPERFAMILY L domain-like 86 359 - -
Cco06g1179 821 Pfam Leucine Rich Repeat 172 189 IPR001611 GO:0005515(InterPro)
Cco06g1179 821 MobiDBLite consensus disorder prediction 397 800 - -
Cco06g1179 821 FunFam Leucine-rich repeat extensin-like protein 5 240 379 - -
Cco06g1179 821 FunFam Leucine-rich repeat extensin-like protein 1 78 239 - -
Cco06g1179 821 MobiDBLite consensus disorder prediction 407 800 - -
Cco06g1179 821 Pfam Leucine rich repeat 289 346 IPR001611 GO:0005515(InterPro)
Cco06g1179 821 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 735 IPR051582 -
Cco06g1179 821 Gene3D Ribonuclease Inhibitor 77 239 IPR032675 -
Cco06g1179 821 Gene3D Ribonuclease Inhibitor 240 370 IPR032675 -
Cco06g1179 821 Pfam Leucine rich repeat N-terminal domain 80 112 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0357 Cco-Chr6:4020937 Cco06g1179 Cco-Chr6:21068478 1.90E-40 dispersed
Cco06g0358 Cco-Chr6:4024727 Cco06g1179 Cco-Chr6:21068478 1.00E-38 dispersed
Cco06g1179 Cco-Chr6:21068478 Cco11g0222 Cco-Chr11:2163074 3.00E-14 dispersed
Cco05g0576 Cco-Chr5:4704217 Cco06g1179 Cco-Chr6:21068478 1.70E-36 transposed
Cco07g0244 Cco-Chr7:2512977 Cco06g1179 Cco-Chr6:21068478 3.20E-33 transposed
Cco11g0272 Cco-Chr11:2702366 Cco06g1179 Cco-Chr6:21068478 6.50E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1179 - - - 0.0