Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1212 ATGGCTGCAGTTTTTTACTTTACCACCCGTCTCCCATTTTTCCTAATTTCATTTTCCCTGCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCATTCTGTCCAGTCTGAGCCCACCGCCGACAAGGCAGCTCTTCTCGATTTCTTGAACAAAACCCCTCATGAGAGTCGCCTTCAATGGAATGCTTCCGCCTCTGCCTGTACTTGGGTTGGAGTTGTCTGTGATGCGACTCAGTCGTTTGTTTTTGCTCTCCGGTTGCCTGGCGTGGGGCTTGTCGGTCCGATTCCGGTTAATACGCTAGGTCGGTTGAATCGGCTCCGAGTTCTCAGTCTCCGGTCGAATAGAATCTCTGGGGAGTTGCCGGCGGATTTTTCTAATTTGGGATTTCTTCGTAGTCTTTATCTTCAGGACAACGTGCTTTCCGGGGATTTTCCGGTGAGTGTGACTCAGTTGACTCGGTTGACTCGACTTGATCTCTCGTCCAACAATTTCTCTGGTTCGATTCCGTTTTCCGTGAATAATCTGACCCATTTGACTGGGCTTTTCTTGGAGAATAATGGGTTTTCGGGTTCTCTGCCGAGTATTCCTGCGGCTGCGACTAGTCTCACGGGATTCAATGTATCGAATAATAAGCTCAACGGATCCATTCCCGAAACCTTATCGAAATTCTCTGCCTCATCTTTCGCCGGAAATTTAGCGCTCTGCGGTGGTCCATTGCCGTCGTGCAACCCGTTTTTTCCCTCCCCTGCTCCATCGCCGACGTCAGCCGTGAAACCCCCACAAGTTCCCGTCGAGAAGAAGTCGAAAAAGCTCTCCATCGCTGCCATTGTCGGAATTGTCGTCGGCGCTGCTTTCTTTGCGTTTATATTGCTGTTTTTGCTCCTGTTTTGTCTACGGAAGCGCGAGCGGGGGCAGCCGGCGAAGCCGCCGACTACGGTGGTTACTACTCGATCTGTTCCGGCGGAGGCAGGTACATCGTCTTCGAAAGACGACATCACCGGGGGATCAGTGGAGACAGAGAAAAACAGATTAGTGTTCTTCGAAGGTGGGGTTTACAGCTTCGATTTGGAGGACTTGTTGAGAGCTTCGGCGGAGGTTTTAGGAAAAGGAAGCGTCGGGACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTGGTAGTGAAGAGATTGAAAGATGTGGTGATGACGAAGAAGGAATTCGAAACGCAAATGGAAGCTCTGGGAAATGTGAAACATGAAAATGTGGTTCCTCTCAGAGCTTTCTACTTTTCCAGAGATGAGAAATTGCTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCTTCTTCCCTTCACGGAAGCAGAGGATCCGGCCGTACGCCACTTGATTGGGACAACCGGATGAAAATCGCATTAAGCGCAGCAAGAGGATTGGCTCACCTCCACGTGTCGGGAAAGCTCGTCCACGGCAATATCAAATCGTCGAACATCCTCCTCCGCCCCAACCACGACGCCGCCGTCTCCGACTTCGGTTTGAACCCTCTCTTCGGCGCTTCGACGCCGCCCAACCGGATCGCCGGGTATCGCGCGCCGGAGGTTGTTGAAACCCGAAAGGTCACTTTCAAGTCCGACGTGTACAGTTTTGGCGTGTTGTTGTTGGAGCTTCTCACCGGGAAATCACCAAATCAAGCGTCGTTGGGTGAAGAAGGGATTGATCTTCCGCGGTGGGTCCAGTCGGTGGTCAGAGAGGAATGGACGGCGGAGGTTTTTGATGTGGAGTTAATGAGGTACCACAATATCGAAGAAGAGATGGTTCAGCTTTTACAAATTGCCATGGCCTGCGTCGCCACCGTGCCGGACCAGCGGCCGTCGATGCCGGAGGTGGTTCGTATGATTGAGGATTTGAACCGGGTGGAGACCGACGACGGATTACGGCAGTCGTCCGATGACCCATCTAAAGGATCGGACGGCCAGACGCCGCCGCAAGAGTCCAGAACCACCCCACACGGAGCTGGCGGACCACCGTAG 2007 52.52 MAAVFYFTTRLPFFLISFSLLLLLLLLLHLHSVQSEPTADKAALLDFLNKTPHESRLQWNASASACTWVGVVCDATQSFVFALRLPGVGLVGPIPVNTLGRLNRLRVLSLRSNRISGELPADFSNLGFLRSLYLQDNVLSGDFPVSVTQLTRLTRLDLSSNNFSGSIPFSVNNLTHLTGLFLENNGFSGSLPSIPAAATSLTGFNVSNNKLNGSIPETLSKFSASSFAGNLALCGGPLPSCNPFFPSPAPSPTSAVKPPQVPVEKKSKKLSIAAIVGIVVGAAFFAFILLFLLLFCLRKRERGQPAKPPTTVVTTRSVPAEAGTSSSKDDITGGSVETEKNRLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKKEFETQMEALGNVKHENVVPLRAFYFSRDEKLLVSDYMAAGSLSSSLHGSRGSGRTPLDWDNRMKIALSAARGLAHLHVSGKLVHGNIKSSNILLRPNHDAAVSDFGLNPLFGASTPPNRIAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVATVPDQRPSMPEVVRMIEDLNRVETDDGLRQSSDDPSKGSDGQTPPQESRTTPHGAGGPP 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21728731 21731170 + CcPI632755_06g012120.1 Cco06g1212 181812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1212 668 Pfam Protein tyrosine and serine/threonine kinase 364 624 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1212 668 Pfam Leucine rich repeat N-terminal domain 39 74 IPR013210 -
Cco06g1212 668 ProSiteProfiles Protein kinase domain profile. 360 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1212 668 SUPERFAMILY Protein kinase-like (PK-like) 364 625 IPR011009 -
Cco06g1212 668 MobiDBLite consensus disorder prediction 643 659 - -
Cco06g1212 668 Gene3D Transferase(Phosphotransferase) domain 1 435 646 - -
Cco06g1212 668 PANTHER OS05G0588300 PROTEIN 19 635 IPR050994 -
Cco06g1212 668 SUPERFAMILY L domain-like 59 222 - -
Cco06g1212 668 FunFam pollen receptor-like kinase 1 330 434 - -
Cco06g1212 668 FunFam Probable inactive receptor kinase RLK902 37 195 - -
Cco06g1212 668 MobiDBLite consensus disorder prediction 308 332 - -
Cco06g1212 668 MobiDBLite consensus disorder prediction 628 668 - -
Cco06g1212 668 Gene3D Ribonuclease Inhibitor 195 242 IPR032675 -
Cco06g1212 668 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 435 639 - -
Cco06g1212 668 MobiDBLite consensus disorder prediction 303 334 - -
Cco06g1212 668 Gene3D Ribonuclease Inhibitor 38 194 IPR032675 -
Cco06g1212 668 MobiDBLite consensus disorder prediction 628 642 - -
Cco06g1212 668 Pfam Leucine Rich Repeat 104 126 IPR001611 GO:0005515(InterPro)
Cco06g1212 668 Pfam Leucine Rich Repeat 200 221 IPR001611 GO:0005515(InterPro)
Cco06g1212 668 Pfam Leucine Rich Repeat 152 174 IPR001611 GO:0005515(InterPro)
Cco06g1212 668 Gene3D Phosphorylase Kinase; domain 1 328 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1516 Cco-Chr5:18706923 Cco06g1212 Cco-Chr6:21728731 7.60E-13 dispersed
Cco06g1212 Cco-Chr6:21728731 Cco10g1936 Cco-Chr10:32933408 6.50E-92 dispersed
Cco11g0287 Cco-Chr11:2900088 Cco06g1212 Cco-Chr6:21728731 4.10E-224 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86922 PF00069 Pkinase 1.40E-36 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1212 - - - 0.0