Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1217 ATGCCCTACATGCACATGGAGCCAGAAGAGAAACATGTGATTCCATCTTCTCAAATGGCGTTGAAATCCCACCATGGATCAAATGATGGTGAGAAAACTAATTTATGGAAAAGGAAAGGAAGAAGGAGAGCAAAAGAACCTTCCATGGAAGGTTTGAAGCAAAAGGAACTTGATCGAAACCTGGAGTTTCCCTCTTCTTCTTCTCGCAAAAGCGTGACATTTCCAAGAAGGCCAGACTTCGGCCAGCTGGGGACTAAATGCTTGGTTAAAGCCAACCACTTCCTAGCAAAAATACCTGAATCAGACATAAGCCATTATAATGTTAAGATAACCCCAGAAGTTACTTCTCGTAAAATGAAGAAGAATATAATGACCGAGTTGGTCAAACATTATAGAAGCACAGAGCTGGGGATGCGACTGCCAGTTTATGATGGAGGAAGCAACCTGTACACAGCCGGATTGCTGCCTTTCATATCAAAAGAGTTCACTGTCATTTTGGCTAATGAAGAAGAGGGGGCAGCCACTCCCAGGGAACGAGAATTTAAAGTGCAGATAAAGTTTGTAACTTTGGCTAGCATGCACCAGTTACGAGAATTACTCGATGGCAAACAAGTTAATAACCCTCAAGAAGCTTTGACCATAATTGACATCGTCTTGAGGGAGCTCCATGCTCAAAGATATATATCAGTTGGGCGATCCTTTTATTCTCCTTGTATTAAGAAGCCTCAGCAGATTGGGGGCGGTTTGCAAGCATGGCGTGGTTTCTATCAAAGCATCCGACCTACTCAAATGGGATTGTCACTAAATATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTTGTCGCTCAAATTTTAAACAAAGACGTGTACTCAAGAACATTGTCTGATGCTGATCGTATTAAGGTCAAAAAAGTACTTAGAGGTGTAAAAGTTGAAGTTACACACCGAGGAAACGTACGAAGGAAATATCGCATTTCAGGGCTAACATCACAGCCTACAAGAGAGCTAATTTTCCCTCTTGATGAGCAGATGAACATGAAATCTGTAGTTGAATACTTCCAAGAGATGTATGGATATACCATTCAGTATACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGGTGAATTATCTACCTATGGAGGCGTGTAAGATACTCAAAGGACAGAGATACACAAAAGGATTGAATGAAAAGCAAATTACTTCCTTGTTGAAGGTTTCATGCCAAAGACCCTCTGATCAGGAAATGGACATTATTCAGACTGTTCATGAGAATGCATATGAGGCAGATCCATATGCAAAAGAATTTGGAATCAATATCGACAACAAGCTTACATCAGTTGAAGCACGAGTCCTTCCATCTCCATGGCTAAAATTTCATGACACTGGAAAAGAAAAGGAACATCAGCCTCAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTAATAGATGGAAGTGTTGTAAGATACTGGGCTTGCATAAATTTCTCACGCAATGTCCAAGAGAACATCGCTCGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAATCTCTGGCATGGAATTTAACCCAGATCCTGCAATTCCTATATACTCAGCAAGACCAGAGCAAGTGAAGAAGGCCTTAAAATTTGTATATGGTGCAGTTTATAACAAACATGAAGGGAAAGAGTTAGATTTGCTGATAGCTATTCTTCCTGACAACAACGGCTCATTATATGGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCCCAGTGTTGTCTAACAAAGCACGTCTTCAAGAAGAGCAGACAGTACCTGGCAAATGTGTCACTTAAGATCAACGTCAAGATGGGTGGAAGAAACACTGTTCTTTTAGATGCTTTGCGGTCAAGAATTCCACTAGTCAGTGACATACCAACCATAATCTTCGGAGCTGATGTCACCCATCCAGAATCTGGAGAGGATTCTCTTCCATCAATAGCGGCTGTTGTGGCTTCCCAAGATTGGCCAGAGGTTACAAAATATGCTGGATTGGTATGTGCTCAGCCACACCGGGAGGAACTGATTCAAGATTTATTCAAAACATGGAAAGATCCTCACCGGGGCACGGTTGCTGGGGGTATGATAAGGGAGCTCTTGCTTTCATTCAAGAAGGCCACTGGACAAAAACCATTAAGGATTATATTCTACAGGGATGGGGTCAGTGAGGGTCAGTTCTACCAGGTTCTACTGCACGAACTCGATGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTACCAACCTCCAGTAACTTTTATCATCGTCCAAAAGCGACACCATACCAGACTTTTTGCATCCAATCACAATGATAGGAGTAGCGCTGACAAGAGTGGTAATATTTTACCAGGTACTGTCGTGGATTCAAAGATATGTCATCCAACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCTGCACATTATCACGTTCTTTGGGATGAGAACAATTTCAGTGCAGATGAAATCCAATCTCTGACTAATAACCTCTGTTACACGTATGCTCGGTGCACAAGATCAGTCTCAGTAGTGCCTCCAGCATACTACGCTCATTTGGCCGCATACAGAGCTCGATTCTACGTAGACCCCGACGCACAGGAGAATGCCAAAAGATGCTGCACTCGAACCACAAATGGATCCTGCGTCCGGCCTCTGCCTGCGCTGAAAGAGAGAGTGAAAAATGTAATAGACCTCCTAAAGAGGCCGAATTTTGAAGGCCTTGACCCACAATTTGACGGGCTTCTCATCTCTCACCCACCAACAGACGGACATGAATAG 2859 42.88 MPYMHMEPEEKHVIPSSQMALKSHHGSNDGEKTNLWKRKGRRRAKEPSMEGLKQKELDRNLEFPSSSSRKSVTFPRRPDFGQLGTKCLVKANHFLAKIPESDISHYNVKITPEVTSRKMKKNIMTELVKHYRSTELGMRLPVYDGGSNLYTAGLLPFISKEFTVILANEEEGAATPREREFKVQIKFVTLASMHQLRELLDGKQVNNPQEALTIIDIVLRELHAQRYISVGRSFYSPCIKKPQQIGGGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQILNKDVYSRTLSDADRIKVKKVLRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEMYGYTIQYTHLPCLQVGNQKVNYLPMEACKILKGQRYTKGLNEKQITSLLKVSCQRPSDQEMDIIQTVHENAYEADPYAKEFGINIDNKLTSVEARVLPSPWLKFHDTGKEKEHQPQVGQWNMMNKKVIDGSVVRYWACINFSRNVQENIARGFCQQLVQMCQISGMEFNPDPAIPIYSARPEQVKKALKFVYGAVYNKHEGKELDLLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGEDSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFASNHNDRSSADKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVDPDAQENAKRCCTRTTNGSCVRPLPALKERVKNVIDLLKRPNFEGLDPQFDGLLISHPPTDGHE 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21855321 21860874 + CcPI632755_06g012170.1 Cco06g1217 181817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1217 952 SUPERFAMILY Ribonuclease H-like 559 889 IPR012337 -
Cco06g1217 952 Pfam Argonaute linker 1 domain 229 279 IPR014811 -
Cco06g1217 952 SMART Piwi_a_2 568 889 IPR003165 GO:0003676(InterPro)
Cco06g1217 952 FunFam protein argonaute 10-like 637 925 - -
Cco06g1217 952 Pfam Argonaute linker 2 domain 423 466 IPR032472 -
Cco06g1217 952 ProSiteProfiles Piwi domain profile. 568 889 IPR003165 GO:0003676(InterPro)
Cco06g1217 952 SUPERFAMILY PAZ domain 275 433 IPR036085 GO:0005515(InterPro)
Cco06g1217 952 Pfam Piwi domain 569 887 IPR003165 GO:0003676(InterPro)
Cco06g1217 952 MobiDBLite consensus disorder prediction 1 76 - -
Cco06g1217 952 SMART DUF1785_2 228 280 IPR014811 -
Cco06g1217 952 Gene3D - 458 631 - -
Cco06g1217 952 CDD Piwi_ago-like 438 887 IPR045246 -
Cco06g1217 952 ProSiteProfiles PAZ domain profile. 282 394 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco06g1217 952 FunFam Argonaute 10 458 631 - -
Cco06g1217 952 Pfam N-terminal domain of argonaute 86 219 IPR032474 -
Cco06g1217 952 Gene3D paz domain 274 398 - -
Cco06g1217 952 Gene3D - 637 923 IPR036397 GO:0003676(InterPro)
Cco06g1217 952 SMART PAZ_2_a_3 285 416 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco06g1217 952 MobiDBLite consensus disorder prediction 43 63 - -
Cco06g1217 952 Pfam Mid domain of argonaute 477 553 IPR032473 -
Cco06g1217 952 CDD PAZ_argonaute_like 280 393 - -
Cco06g1217 952 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 77 895 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cco06g1217 952 FunFam Protein argonaute-2 274 399 - -
Cco06g1217 952 Pfam PAZ domain 285 410 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0563 Cco-Chr5:4557981 Cco06g1217 Cco-Chr6:21855321 0.00E+00 dispersed
Cco05g2667 Cco-Chr5:34708635 Cco06g1217 Cco-Chr6:21855321 8.00E-166 dispersed
Cco06g1217 Cco-Chr6:21855321 Cco09g1120 Cco-Chr9:10772843 2.90E-130 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1217 K11593 - csv:101213206 1781.92