Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1241 ATGACGTGCTTACTACTACGTGCTGCTGGCACAAAGATGGAAGATCGGGGTGGAGCTGACAGACAACGTGCTTGCTACTATGTGCTGCTGGCACGAAGATGGAAGATCGAGGTGGAGGCTGATGGTTGTGAAACTCCACTCCGAATCTGTCCTCGATTTCAGGCTGTGAAAGCTTCGGGATTTTGGGCAAGAAGATACCCAATGAAAGGGGAAGTACAACTGGAGTCATCAATTGGCCAAAACCCTAGTGACTCTGATCCTCTTCTTGAGAATCAGACCGATTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTATAGCTGTACAAACTTTAATAGCGGCAATGGGTGGTTATGCATATATAATGGACAAAGATGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCCAAACATCCTATTCCATTTTATTATTGTATCGGGGTCCTAGCCTTCTTTGTTCTGCTCGGATTCTTCGGGCTCATACTGCATTGTTCCACCCTTAATAGTAATGATCCAAGAGTTGCCGGGTGTCACAACTGTTGCTATGGATGGGGAATATTGGATTGTTTCCCTGCATCTATGGAAGCCTGCTTTGCACTTGTTATCGTTTTCGTGGTTATCTTTGTAATTCTTGGCATAGCTTATGGTTTCCTTGCTGCTACAATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACAAAAAGGGAACTGACTAAAGAATATGTGGTGGAGGATCTTCATGGATGTTATACTCCTCCAAAATTGGAACCAGAACATGAACAACACTTGAAAATGCTACAGCTTCTGTAA 1119 43.7 MTCLLLRAAGTKMEDRGGADRQRACYYVLLARRWKIEVEADGCETPLRICPRFQAVKASGFWARRYPMKGEVQLESSIGQNPSDSDPLLENQTDSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFIAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSTLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22374794 22381773 + CcPI632755_06g012410.1 Cco06g1241 181841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1241 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 181 IPR013083 -
Cco06g1241 372 SMART ringv_2 116 168 IPR011016 GO:0008270(InterPro)
Cco06g1241 372 MobiDBLite consensus disorder prediction 74 98 - -
Cco06g1241 372 SUPERFAMILY RING/U-box 115 172 - -
Cco06g1241 372 ProSiteProfiles Zinc finger RING-CH-type profile. 109 174 IPR011016 GO:0008270(InterPro)
Cco06g1241 372 CDD RING_CH-C4HC3_MARCH 117 168 - -
Cco06g1241 372 Pfam RING-variant domain 117 167 IPR011016 GO:0008270(InterPro)
Cco06g1241 372 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 78 371 - -
Cco06g1241 372 MobiDBLite consensus disorder prediction 74 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1671 Cco-Chr4:31929833 Cco06g1241 Cco-Chr6:22374794 1.50E-54 dispersed
Cco06g1241 Cco-Chr6:22374794 Cco07g1542 Cco-Chr7:29419721 4.30E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1241 - - - 0.0