Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco06g1242 | ATGGAGACCATTAGAAACAGAGGGGGTTTCAGGGTTTCTGTTTGTGGCCAAGAAGAGCTCGAGCAACTCTCCAGAGATGGCAGTCAGTACAGCCTTACCACTGGAATATTGCCTTCTCTTGGCGCTAGAAGCAATCGCAGAGTTAAGCTCCGGCGCTTTATCATTTCGCCTTATGACCGTCGATACAGGATTTGGGAGACTTTTCTGGTTGTTTTGGTGGTATATACTGCTTGGGTCTCGCCGTTCGAGTTTGGATTCCTTAAGAAACCCCAATCACCACTCTCTGTTACAGACAACGTGGTTAATGGATTTTTTGCTGTGGATATTGTTCTCACATTCTTTGTAGCCTACCTTGATAAAACCACCTATTTACTTGTTGATGAACCCAAGAGGATTGCTCTGAAGTACTCAAGGACATGGCTAATCTTTGACGTCATATCCACAATTCCTTCTGAACTTGCACAGAAGATTTCCCCTTCACCTCTTCGTTCTTATGGATTATTCAACATGCTTCGTCTATGGCGTCTCCGAAGAGTCAGTGCTCTGTTTTCCAGACTGGAGAAAGATAGGAACTATAACTACTTTTGGGTTCGATGTGCCAAACTCGTTTGTGTTACTCTCTTTGCAGTTCACTGTGCTGCATGCTTCTATTATCTTCTTGCTGCTCGTTATCGTGACCCGAAAAATACGTGGATTGGAGCATCTATGGAGAACTTTCTGGAACAAAGTTTGTGGATCAGATATGTCACTTCCGTTTACTGGTCTATCACCACCCTAACCACTGTTGGCTATGGCGACTTGCATCCTGTGAATACAAGGGAGATGATTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACAGCATACTTGATTGGAAATATGACCAACTTAGTTGTCCATGGGACCAGTAGAACCAGAAAATTCAGAGATACCATACAAGCTGCATCTAGTTTCGCCCATAGGAATCAACTTCCTGTTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAAGAAACTCTTGATTCCTTGCCTAAAGCAATCCGGTCGAGCATTTCACATTATCTTTTCTATTCTCTAGTAGACAAGGTCTACTTGTTTCGGGGTGTTTCAAATGACCTACTTTTTCAACTGGTTTCAGAAATGAAGGCAGAATATTTTCCTCCAAAAGAAGATGTGATCTTACAAAATGAAGCCCCAACAGATTTCTACATTCTTGTCACGGGTGCTGTGGATTTGCTAGTTCTCAAGAATGGAGTTGAACAGCCTGTTGGAGAGGCTAAAACGGGCGATCTTTGTGGAGAGATTGGGGTGTTATGTTATAGACCACAACTGTTTACTGTTCGTACAAAGCGTTTGAGTCAGCTGCTGCGTCTGAATCGGACGGCTTTCCTAAATATTGTTCAATCTAATGTTGGTGATGGGACCATAATCATGAACAATCTTCTTCAGCATTTGAAGGACCTGAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTGGCTAGAGGCAGAATGGACCTACCACTAAGTCTTTGCTTTGCAACACTTAGAGGAGATGATTTGCTTTTACACCAGCTTTTGAAAAGAGGTCTCGATCCAAATGAATCAGACAATACCGGGAGGACTTCACTCCATATAGCAGCATCAAATGGAAATGAGAACTGTGTGCTTCTATTACTGGACTATGGAGCTGATCCCAATAGTAGAGATTCAGATGGGAGTGTGCCATTATGGGAGGCAATACAAGGTGGCCATGAGGCGGTAGTTCAGCTACTTATAGACAATGGTGCTAACCTTCGATCGGGAGATGTCGGCCACTTTGCGTGTACTGCTGCAGAGCAAAACAACCTCCAGTTGCTCAAGGAGATTATCCGATATGGAGGAGATGTTACGAGTGCCAGGAACAATGGAACGACAGCTTTACATGTTGCTGTTTGTGAGGACAACATTGAGATTGTCAAGTTTCTTCTCAAACAAGGTGCTGATATCGATAAACCAGATGTCCATGGATGGACTCCAAGAGATCTAGCTGACCAACAGGGACATGAAGAAATTAAAATCCTGTTCCAAACAACAAAAGAGTCAAAAACTCAATCTGTCCTTGCAATTCCTGTACCGGAGAAGCAGACAGGGATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCGTCCTCAACCTCAGGAAGCAAATGATGGTTCATGGCCGGGTCAATCACGTCCCCGGCGTAGGACTAACAACTTCCATAATTCATTGTTTGGTATCATGTCAGCAGCACACTCAGGGGAGAAAGACATTCCTTTTCCTGATAACCAAACCTGTGGACAGAACTCTGGAACCAACCCTGCAAGGGTGATAATCAGCTGTCCAGAGATCGGCGAAGTTAGTGGGAAGTTGGTGCTGCTTCCGGAAAGCTACAACAAGCTGCTTGAGATTGGTGTCAAGAAATATGGGATTATGGCAACAAAGGTATTGAACAAAGATGGAGCTGCCATTGAAGATATAGAGGTGATTAGGGATGGTGATCATCTTATTTTTGTCAGCGATGGAAGGACCTCATAA | 2628 | 43.76 | METIRNRGGFRVSVCGQEELEQLSRDGSQYSLTTGILPSLGARSNRRVKLRRFIISPYDRRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLDKTTYLLVDEPKRIALKYSRTWLIFDVISTIPSELAQKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLVCVTLFAVHCAACFYYLLAARYRDPKNTWIGASMENFLEQSLWIRYVTSVYWSITTLTTVGYGDLHPVNTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQPVGEAKTGDLCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNTGRTSLHIAASNGNENCVLLLLDYGADPNSRDSDGSVPLWEAIQGGHEAVVQLLIDNGANLRSGDVGHFACTAAEQNNLQLLKEIIRYGGDVTSARNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKILFQTTKESKTQSVLAIPVPEKQTGIRFLGRFTSEPMIRPQPQEANDGSWPGQSRPRRRTNNFHNSLFGIMSAAHSGEKDIPFPDNQTCGQNSGTNPARVIISCPEIGEVSGKLVLLPESYNKLLEIGVKKYGIMATKVLNKDGAAIEDIEVIRDGDHLIFVSDGRTS | 875 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 22383764 | 22388829 | - | CcPI632755_06g012420.1 | Cco06g1242 | 181842 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco06g1242 | 875 | FunFam | Potassium channel SKOR | 63 | 301 | - | - | |
| Cco06g1242 | 875 | Gene3D | - | 63 | 301 | - | - | |
| Cco06g1242 | 875 | FunFam | Potassium channel KAT2 | 368 | 504 | - | - | |
| Cco06g1242 | 875 | ProSiteProfiles | Ankyrin repeat profile. | 657 | 689 | IPR002110 | GO:0005515(InterPro) | |
| Cco06g1242 | 875 | ProSiteProfiles | Ankyrin repeat region circular profile. | 593 | 624 | - | - | |
| Cco06g1242 | 875 | SUPERFAMILY | Voltage-gated potassium channels | 57 | 301 | - | - | |
| Cco06g1242 | 875 | ProSiteProfiles | Ankyrin repeat profile. | 560 | 592 | IPR002110 | GO:0005515(InterPro) | |
| Cco06g1242 | 875 | Pfam | Ankyrin repeats (3 copies) | 532 | 622 | IPR002110 | GO:0005515(InterPro) | |
| Cco06g1242 | 875 | Pfam | Ankyrin repeats (3 copies) | 631 | 710 | IPR002110 | GO:0005515(InterPro) | |
| Cco06g1242 | 875 | ProSiteProfiles | Ankyrin repeat profile. | 593 | 625 | IPR002110 | GO:0005515(InterPro) | |
| Cco06g1242 | 875 | Pfam | Cyclic nucleotide-binding domain | 399 | 485 | IPR000595 | - | |
| Cco06g1242 | 875 | SUPERFAMILY | Ankyrin repeat | 531 | 709 | IPR036770 | - | |
| Cco06g1242 | 875 | PRINTS | EAG/ELK/ERG potassium channel family signature | 75 | 82 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco06g1242 | 875 | PRINTS | EAG/ELK/ERG potassium channel family signature | 274 | 285 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco06g1242 | 875 | PRINTS | EAG/ELK/ERG potassium channel family signature | 248 | 265 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco06g1242 | 875 | PRINTS | EAG/ELK/ERG potassium channel family signature | 292 | 301 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco06g1242 | 875 | PRINTS | EAG/ELK/ERG potassium channel family signature | 109 | 118 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco06g1242 | 875 | PRINTS | EAG/ELK/ERG potassium channel family signature | 98 | 108 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco06g1242 | 875 | PANTHER | POTASSIUM CHANNEL AKT1 | 22 | 867 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Cco06g1242 | 875 | CDD | CAP_ED | 380 | 485 | IPR000595 | - | |
| Cco06g1242 | 875 | SMART | ANK_2a | 624 | 653 | IPR002110 | GO:0005515(InterPro) | |
| Cco06g1242 | 875 | SMART | ANK_2a | 593 | 622 | IPR002110 | GO:0005515(InterPro) | |
| Cco06g1242 | 875 | SMART | ANK_2a | 657 | 686 | IPR002110 | GO:0005515(InterPro) | |
| Cco06g1242 | 875 | SMART | ANK_2a | 527 | 556 | IPR002110 | GO:0005515(InterPro) | |
| Cco06g1242 | 875 | SMART | ANK_2a | 560 | 589 | IPR002110 | GO:0005515(InterPro) | |
| Cco06g1242 | 875 | Pfam | KHA, dimerisation domain of potassium ion channel | 806 | 868 | IPR021789 | - | |
| Cco06g1242 | 875 | SUPERFAMILY | cAMP-binding domain-like | 305 | 500 | IPR018490 | - | |
| Cco06g1242 | 875 | SMART | cnmp_10 | 380 | 497 | IPR000595 | - | |
| Cco06g1242 | 875 | PRINTS | Ankyrin repeat signature | 673 | 687 | IPR002110 | GO:0005515(InterPro) | |
| Cco06g1242 | 875 | PRINTS | Ankyrin repeat signature | 561 | 576 | IPR002110 | GO:0005515(InterPro) | |
| Cco06g1242 | 875 | ProSiteProfiles | Ankyrin repeat region circular profile. | 657 | 688 | - | - | |
| Cco06g1242 | 875 | MobiDBLite | consensus disorder prediction | 745 | 764 | - | - | |
| Cco06g1242 | 875 | Gene3D | - | 528 | 712 | IPR036770 | - | |
| Cco06g1242 | 875 | Gene3D | Jelly Rolls | 344 | 506 | IPR014710 | - | |
| Cco06g1242 | 875 | ProSiteProfiles | Ankyrin repeat region circular profile. | 560 | 591 | - | - | |
| Cco06g1242 | 875 | ProSiteProfiles | KHA domain profile. | 806 | 875 | IPR021789 | - | |
| Cco06g1242 | 875 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 380 | 482 | IPR000595 | - | |
| Cco06g1242 | 875 | Pfam | Ion transport protein | 62 | 307 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g0744 | Cco-Chr3:7693331 | Cco06g1242 | Cco-Chr6:22383764 | 5.10E-07 | dispersed | |
| Cco03g0900 | Cco-Chr3:11221898 | Cco06g1242 | Cco-Chr6:22383764 | 4.10E-88 | dispersed | |
| Cco05g1944 | Cco-Chr5:28513218 | Cco06g1242 | Cco-Chr6:22383764 | 1.30E-305 | dispersed | |
| Cco05g1967 | Cco-Chr5:28740669 | Cco06g1242 | Cco-Chr6:22383764 | 1.40E-08 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco06g1242 | K21867 | - | csv:101220784 | 1675.99 |