Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1252 ATGGAGGATAAGAAAGCCAACTTAATTGCTCTTTTCTTAATCCTCTTCCTCATCCTTCTCCTCATTCTTGCTCGAGTTTTCCTCCAATTTTCCAAGGCTTTTTTCCTTATTTGCGGGATCAATGTTTCCCTCACCGCCGCTATCTTGGTCTACATGCTCATCAGACTACGATACAACCGGAGAAGCAAACAACTCCAGTCTCAGTTAGTTTCCGAAGGTCGAGAGCTTCGGATCGAGTACAGTTTTTTAAGAAAGGTCGCCGGAGTCCCCACCAAGTTCCGGTACAAAGAGCTCGAGGAAGCCACCGACTATTTCAGAGCGTTGATAGGGCAAGGATCTTCCGGTTCCGTCTTCAAAGGAATCCTCAAAGACGGCACTGCAGTAGCCGTCAAGCGGATCGAGGGCGAGAATCGAGGAGACAAAGAGTTTCGAGCGGAGGTATCCGCCATTGCTAGTGTTCAGCATATAAATCTCGTTCGTCTAATTGGTTACTGTACTAATTCATCTGGACCTCGATTTCTCGTCTATGATTTCGTACCGAATGGATCCTTGGATTGCTGGATTTTCCCCAAAAAACCTAAGCACAACAATCGAAATCGTCCTGGCGGTTGCTTAGCTTGGGATCTGAGATATAGAGTCGCCATTGATGTTGCTAAAGCCCTAGCCTACCTTCACCATGATTGCCGATCGAGAATCTTACACCTCGATGTGAAGCCGGAAAACATCCTCCTCGATGAAAATTACAGAGCAACCGTAACGGATTTCGGATTGTCGAAGCTGATGGGGAAAGATGAGAGCCGAATAATGATATCGATGAGAGGAACGAAGGGGTATTTGGCTCCGGAATGGCTATTGGAGAACGGAATTTCAGAGAAATCGGACGTATACAGCTACGGAATGGTTCTTCTGGAACTAGTCGGAGGTCAGAGAAACGTGAGCGTAGTTGAAAATGGAGAAGACAGATCTAAGAGGAAATGGCAGTATTTTCCTCGAATCGTGAGTGCGAAGATGAGGGAAGGGAAATTAATGGAAGCTGTGGATAAAAGGCTATTGGAAACGGGAACGATTGACGAGAGAGAGGTACAGAAACTGGTTTGTGTGGGTTTGTGGTGTATACAAGAGAAGGCGAAGCTCAGGCCGACGATGGCGACGGTGGTGGATATGCTCGAAGGCCGCGTCCCGGTGGAGGAGCCGCCGGATACTGAAATGTTCGTCGTTGATTTGTTGTCTATTGATGAAGAGATGATGAACAGCCATGAGAGGCCGAAGATTGTCCCATTTGGAGAACGGATGAACGACAGAAATCTTCCTTCGTCTTCGTCGACGACGTGTTCGTACGCTATCTCGGTACTCTCCGCCCGGTGA 1365 47.69 MEDKKANLIALFLILFLILLLILARVFLQFSKAFFLICGINVSLTAAILVYMLIRLRYNRRSKQLQSQLVSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDYFRALIGQGSSGSVFKGILKDGTAVAVKRIEGENRGDKEFRAEVSAIASVQHINLVRLIGYCTNSSGPRFLVYDFVPNGSLDCWIFPKKPKHNNRNRPGGCLAWDLRYRVAIDVAKALAYLHHDCRSRILHLDVKPENILLDENYRATVTDFGLSKLMGKDESRIMISMRGTKGYLAPEWLLENGISEKSDVYSYGMVLLELVGGQRNVSVVENGEDRSKRKWQYFPRIVSAKMREGKLMEAVDKRLLETGTIDEREVQKLVCVGLWCIQEKAKLRPTMATVVDMLEGRVPVEEPPDTEMFVVDLLSIDEEMMNSHERPKIVPFGERMNDRNLPSSSSTTCSYAISVLSAR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22560155 22561519 + CcPI632755_06g012520.1 Cco06g1252 181852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1252 454 FunFam Putative receptor-like protein kinase 70 178 - -
Cco06g1252 454 SMART serkin_6 103 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1252 454 ProSiteProfiles Protein kinase domain profile. 103 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1252 454 SUPERFAMILY Protein kinase-like (PK-like) 85 390 IPR011009 -
Cco06g1252 454 CDD STKc_IRAK 109 391 - -
Cco06g1252 454 Gene3D Transferase(Phosphotransferase) domain 1 179 400 - -
Cco06g1252 454 Pfam Protein kinase domain 108 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1252 454 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 50 410 - -
Cco06g1252 454 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524(InterPro)
Cco06g1252 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1252 454 Gene3D Phosphorylase Kinase; domain 1 66 178 - -
Cco06g1252 454 FunFam Putative receptor-like protein kinase 179 397 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1252 Cco-Chr6:22560155 Cco08g1015 Cco-Chr8:21967928 2.20E-75 dispersed
Cco06g1252 Cco-Chr6:22560155 Cco08g1505 Cco-Chr8:26794024 1.40E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86923 PF00069 Pkinase 1.80E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1252 - - - 0.0