Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1286 ATGGCAGAAGAGAAAGAAGGGATTTTGTTCATAATTTTGGGAATTTTAATGATGGGTTTGCGAGTAAATGGTGAGCTGAGAAATGGGTTTTATTCTTTTTCATGTCCAAAAGCAGAGTCTATAGTGAGAAAGACAGATCCTACCATTGCAGCTGGGTTGTTGAGGCTTCATTTTCACGACTGTTTTGTGCAGGGATGTGATGGTTCAGTGTTGATTTCGGGTGGTTTAGCAGAGAGAAATGCTTTGCCAAACATTGGATTAAGAGGGTTTCAAGTAATAGAAGATGCAAAAGCAGAGCTTGAAGCTGAGTGCCCTGGAGTTGTTTCTTGCGCTGATATTCTTGCTTTGGCTGCTCGTGATGCTGTTGACTTGAGTAATGGGCCAAGTTGGTCAGTGCCCACAGGAAGAAGGGATGGAAGGGTTTCTTCAAAATCCCAAGCCGAAAACTTACCTTCTCCACTCGAGTCCATTGCTGTGCACAAGGAAAAATTTGCACAAAAAGGCCTCGACGAACAAGACCTCGTTACCTTACTCGGAGCACACACGATAGGACAAACGGATTGCCTATTCTTCAGATACCGTCTACACAACTTCACAACAACAGGCAATTCAGATCCAACCATAAACCCATCATTCTTAACAGAACTAAAAGCACTTTGCCCCAAAGATGGAGATGCAACCAAAAGGGTGGCGTTGGACAAAGACAGCCAATTCAAATTTGACCTTAGTTTCTTCAACAACATTAGAGATGGAAATGGAGTTTTGGAGTCGGACCAAAGGCTTTGGAGTGACGACTCAACCAGAAGCATTCTCCAAAAGTACATCAGCCCCTTAAGAGGACTTTTAGGCCTTAGATTTGACTACAACTTTAGGAAATCAATGATTAAGATGAGTAGCATTGAGGTCAAGACCGGTACACAAGGAGAGATTAGGAGAAAATGTTCGAGGTTTAATTAG 957 42.63 MAEEKEGILFIILGILMMGLRVNGELRNGFYSFSCPKAESIVRKTDPTIAAGLLRLHFHDCFVQGCDGSVLISGGLAERNALPNIGLRGFQVIEDAKAELEAECPGVVSCADILALAARDAVDLSNGPSWSVPTGRRDGRVSSKSQAENLPSPLESIAVHKEKFAQKGLDEQDLVTLLGAHTIGQTDCLFFRYRLHNFTTTGNSDPTINPSFLTELKALCPKDGDATKRVALDKDSQFKFDLSFFNNIRDGNGVLESDQRLWSDDSTRSILQKYISPLRGLLGLRFDYNFRKSMIKMSSIEVKTGTQGEIRRKCSRFN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23014698 23017769 - CcPI632755_06g012860.1 Cco06g1286 181886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1286 318 ProSitePatterns Peroxidases active site signature. 50 61 IPR019794 GO:0004601(InterPro)
Cco06g1286 318 ProSitePatterns Peroxidases proximal heme-ligand signature. 173 183 IPR019793 -
Cco06g1286 318 FunFam Peroxidase 151 297 - -
Cco06g1286 318 SUPERFAMILY Heme-dependent peroxidases 26 318 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PRINTS Haem peroxidase superfamily signature 173 188 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PRINTS Haem peroxidase superfamily signature 108 125 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PRINTS Haem peroxidase superfamily signature 233 248 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PRINTS Haem peroxidase superfamily signature 50 64 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PRINTS Haem peroxidase superfamily signature 126 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 CDD secretory_peroxidase 25 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco06g1286 318 FunFam Peroxidase 29 166 - -
Cco06g1286 318 MobiDBLite consensus disorder prediction 127 149 - -
Cco06g1286 318 Pfam Peroxidase 44 274 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PANTHER PEROXIDASE 25-RELATED 20 314 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cco06g1286 318 ProSiteProfiles Plant heme peroxidase family profile. 25 318 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 Gene3D - 29 318 - -
Cco06g1286 318 PRINTS Plant peroxidase signature 247 264 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PRINTS Plant peroxidase signature 52 72 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PRINTS Plant peroxidase signature 126 141 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PRINTS Plant peroxidase signature 107 117 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PRINTS Plant peroxidase signature 88 101 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PRINTS Plant peroxidase signature 231 246 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 PRINTS Plant peroxidase signature 172 184 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1286 318 Gene3D Peroxidase, domain 2 151 297 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0561 Cco-Chr6:6067491 Cco06g1286 Cco-Chr6:23014698 1.10E-63 dispersed
Cco06g1286 Cco-Chr6:23014698 Cco09g1704 Cco-Chr9:28430584 1.60E-104 dispersed
Cco06g1286 Cco-Chr6:23014698 Cco06g1290 Cco-Chr6:23041109 4.40E-123 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1286 K00430 - csv:101221881 570.852