Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1290 ATGTCAACATTGCAGTGTTGCGAGGCGATCAAGACTAGTTTGCTCGTGAAACAACGGGGTTCGACTCTGCTATCCCGACGATCGCGGCATCACTCTCCGTCAAGTGAAACTGTGGAACCCACGGTTCAAACAGTACAACCTGAAAAGATCTATGAAAGAATGGGACAAACAAAAGCCATGTGGTGGAATTTTGTGACAATTCTAGTAATGGTTTTGCCTGTGAAATCTCAGCTGAGTTTTGGGTTTTACTCAAAGTCTTGTCCTAAAGTTGAGTCCATTGTTAGGTCTACCGTTGAGTCTTATTACAAGGCTGATCCCACCATTGCTGCTGGCTTGCTTAGGCTTCATTTTCATGATTGTTTTGTTCAGGGATGTGATGGTTCAGTATTGATAATGGATGAAAATGCTGAAATAAATGCAGGGCCAAATATGGGGTTAAGAGGCTTTGAAGTAGTTGATGATGCAAAATCCCAACTCGAAAGTTTGTGTCCTGGAGTTGTTTCTTGTGCAGATATTCTTGCTTTGGCTTCTCGTGATGCTGTAGACTTGAGTGATGGTCCAAGTTGGTCTGTGCCCACGGGCAGAAGGGACGGGACGATTTCTATGCGTTTCCAGGCGGAAGATCTTCCTTCTCCATTTGAGCCCATCGATAACCACATACAAAAGTTTGCAGAGAAAGGCCTTACTGAAGAAGATCTTGTAACCCTAGTTGGTGGTCACACGATCGGGCGAACGGATTGCCAGCTATTCAGTTACCGTCTACAGAACTTCACAAGCACAGGGAATGCAGACCCAACCATAAGCCCATCGTTCTTGACTGAACTGAGAAGCCTGTGCCCTTTGGATGGAGATCCATTCAGAGGAGTGTCCATGGACAAGGGCAGCCAGTTGAAATTCGACAACAGTTTTTACAAGAACTTGATAGATGGGAATGGGGTTTTGGAGTCTGACCAGAGACTTTGGAGCCACCCTTCAACAAGAGACATTGTGAAGAGATATGCTGGGAATTTAAGGGGATTGTTGGGCCTTAGATTTAACTATGAGTTTAAGAAAGCTATGGTTAAGTTGAGTAGCATTGGTGTTAAGACTGGCACGCAAGGGGAGATTAGAAAAGTGTGTTACCAGTTCAATAAGCAGTGA 1140 44.65 MSTLQCCEAIKTSLLVKQRGSTLLSRRSRHHSPSSETVEPTVQTVQPEKIYERMGQTKAMWWNFVTILVMVLPVKSQLSFGFYSKSCPKVESIVRSTVESYYKADPTIAAGLLRLHFHDCFVQGCDGSVLIMDENAEINAGPNMGLRGFEVVDDAKSQLESLCPGVVSCADILALASRDAVDLSDGPSWSVPTGRRDGTISMRFQAEDLPSPFEPIDNHIQKFAEKGLTEEDLVTLVGGHTIGRTDCQLFSYRLQNFTSTGNADPTISPSFLTELRSLCPLDGDPFRGVSMDKGSQLKFDNSFYKNLIDGNGVLESDQRLWSHPSTRDIVKRYAGNLRGLLGLRFNYEFKKAMVKLSSIGVKTGTQGEIRKVCYQFNKQ 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23041109 23043829 - CcPI632755_06g012900.1 Cco06g1290 181890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1290 379 FunFam Peroxidase 81 215 - -
Cco06g1290 379 ProSiteProfiles Plant heme peroxidase family profile. 77 377 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Plant peroxidase signature 87 106 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Plant peroxidase signature 147 160 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Plant peroxidase signature 185 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Plant peroxidase signature 306 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Plant peroxidase signature 290 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Plant peroxidase signature 231 243 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Plant peroxidase signature 351 364 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Plant peroxidase signature 111 131 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Plant peroxidase signature 166 176 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 FunFam Peroxidase 210 356 - -
Cco06g1290 379 SUPERFAMILY Heme-dependent peroxidases 77 377 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 Gene3D Peroxidase, domain 2 210 356 - -
Cco06g1290 379 Gene3D - 81 377 - -
Cco06g1290 379 PANTHER PEROXIDASE 25-RELATED 72 373 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cco06g1290 379 ProSitePatterns Peroxidases proximal heme-ligand signature. 232 242 IPR019793 -
Cco06g1290 379 Pfam Peroxidase 94 336 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Haem peroxidase superfamily signature 167 184 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Haem peroxidase superfamily signature 232 247 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Haem peroxidase superfamily signature 109 123 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Haem peroxidase superfamily signature 185 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 PRINTS Haem peroxidase superfamily signature 292 307 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g1290 379 ProSitePatterns Peroxidases active site signature. 109 120 IPR019794 GO:0004601(InterPro)
Cco06g1290 379 MobiDBLite consensus disorder prediction 21 43 - -
Cco06g1290 379 CDD secretory_peroxidase 77 373 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1290 Cco-Chr6:23041109 Cco09g1704 Cco-Chr9:28430584 3.40E-106 dispersed
Cco06g1286 Cco-Chr6:23014698 Cco06g1290 Cco-Chr6:23041109 4.40E-123 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1290 K00430 - csv:101214998 593.964