Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1292 ATGCCCAAGTTAAAGAAATTTAGAGGCGTTAGGCAACGTCATTGGGGCTCTTGGGTTTCTGAAATTCGGCACCCTTTATTGAAGAGAAGGATATGGCTTGGGACGTTTGAGACGGCGGAGGAAGCAGCAAAAGCGTACGACCAAGCTGCGGTTTTGATGAGCGGTCGGAATGCGAAAACCAATTTCCCTACAACTCCTCCCAATGGAGACACCAACAACGTTATTACGACGACCAAGGATTCACCAAAGTGTTTGTCTGAAATATTACAAGCTAAGCTCAAGAAATGTTGTCGTACTCCATCGCCGTCGATGACATGCTTGAGGCTCGACACCGAGAATTCGAATATCGGTGTGTGGCAGAAGCGTGCCGGGCAACGGTCAACATCCAACTGGGTTATGACCGTTGAGCTAGGAAACAAGAAGAGCCACAATAACAACGACAACGACAATGCAGATTCTCCTATGATGGCTGTGGTTGCTTCAGATCATCAGTCTCCGACGGCGGTTGCGGAAGTGGCGGAGATTCCATCCGAGTTGGATGAAGAAGAGAAAATGCTAGCATTGCAAATGGTGGAGGAATTGCTTGACATCAACTCTGATCCTGCTGAGCCATTTGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG 651 47.0 MPKLKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAAKAYDQAAVLMSGRNAKTNFPTTPPNGDTNNVITTTKDSPKCLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQRSTSNWVMTVELGNKKSHNNNDNDNADSPMMAVVASDHQSPTAVAEVAEIPSELDEEEKMLALQMVEELLDINSDPAEPFEIQQGKDINYL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23095079 23095859 - CcPI632755_06g012920.1 Cco06g1292 181892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1292 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1292 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 135 IPR050913 -
Cco06g1292 216 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1292 216 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1292 216 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Cco06g1292 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1292 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1292 216 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cco06g1292 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco06g1292 216 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1292 Cco-Chr6:23095079 Cco08g1532 Cco-Chr8:26979231 6.40E-25 dispersed
Cco11g0324 Cco-Chr11:3253956 Cco06g1292 Cco-Chr6:23095079 5.30E-60 wgd
Cco05g1928 Cco-Chr5:28390230 Cco06g1292 Cco-Chr6:23095079 8.10E-56 wgd
Cco06g1292 Cco-Chr6:23095079 Cco07g1345 Cco-Chr7:27552298 6.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59508 PF00847 AP2 7.20E-12 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1292 - - - 0.0