Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1297 ATGAGGCGACTAACTAGAAAAGTTGGGAAGTATGAGGTGGGGCGGACTGTCGGCGAAGGGACGTTCGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGGGAGGGTGTGGCCATGAAAATTTTGGCCAAAAGTAGCATTCTCAAGCACAAAATGGTAGAACAGATTAAGAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCCGACTGCACGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTTCAAAAGAAGCTTCCAGAAACTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGGAAATCTGAAGGTTTCTGACTTTGGACTGAGTGCGCTATCGCAACAAGGTGTTGAGCTACTTCACACCACATGTGGAACTCCAAATTATGTTGCACCCGAGGTACTTGGAGGTCAGGGTTATGACGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGATATCTTCCATTTTCAGAGACAGACCTCCCCACCCTAAATATGAAGATAAATGCAGCGGAGTATTCCTGCCCCTATTGGTTTTCATCTGGTGCGAAGTCCTTGATACAGAAGATCCTTGATCCGAATCCTAAAACTCGGATTCGAATTGAAGAAATTAGAAAAGATCCATGGTTCAGAAGAAACTACATTCCTGCTAAACTAGGAGAAGTTGAGGAAGTAAACTTAGATGATGTTCGGGCTGTTTTTGATGACATTGAGGAAGAATATGTCGCTGATCAGTCAGAAAAAAGTGATGACGGTCCTTTGATAATGAATGCATTTGAGATGATAACATTGTCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCAAACTTTATAATGTCTAGTATTGAAGCAGTAGCAGAAGCTATGGGTTTAAATGTCTCCACGCGTCATTTCAAGACAAGGTTGGAAAGAAGGATTGGACACAGGGTTGCACAATTTGCTGCTGTGCTGGAGATTTATGAGGTGGCACCGTCGCTTTTTATGGTGGACGTTCGCAAAGCTGCCGGTGACACACTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTTGAAAACATAATCTGGAAACCAACTGAAAGTGTGGGGAACTGA 1314 42.77 MRRLTRKVGKYEVGRTVGEGTFAKVKFACNTETGEGVAMKILAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVSGGELYDKIVLQKKLPETESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSQQGVELLHTTCGTPNYVAPEVLGGQGYDGAAADIWSCGVILYVLMAGYLPFSETDLPTLNMKINAAEYSCPYWFSSGAKSLIQKILDPNPKTRIRIEEIRKDPWFRRNYIPAKLGEVEEVNLDDVRAVFDDIEEEYVADQSEKSDDGPLIMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRKPANFIMSSIEAVAEAMGLNVSTRHFKTRLERRIGHRVAQFAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPTESVGN 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23194179 23198140 - CcPI632755_06g012970.1 Cco06g1297 181897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1297 437 FunFam Non-specific serine/threonine protein kinase 304 430 - -
Cco06g1297 437 Pfam NAF domain 307 365 IPR004041 GO:0007165(InterPro)
Cco06g1297 437 CDD CIPK_C 311 426 - -
Cco06g1297 437 Gene3D Transferase(Phosphotransferase) domain 1 91 272 - -
Cco06g1297 437 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco06g1297 437 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165(InterPro)
Cco06g1297 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1297 437 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1297 437 FunFam Non-specific serine/threonine protein kinase 4 306 - -
Cco06g1297 437 SMART serkin_6 11 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1297 437 Pfam Protein kinase domain 11 264 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1297 437 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Cco06g1297 437 SUPERFAMILY Protein kinase-like (PK-like) 8 309 IPR011009 -
Cco06g1297 437 Gene3D Kinase associated domain 1, KA1 304 430 - -
Cco06g1297 437 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524(InterPro)
Cco06g1297 437 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0063 Cco-Chr5:584971 Cco06g1297 Cco-Chr6:23194179 7.40E-134 dispersed
Cco06g1297 Cco-Chr6:23194179 Cco06g1418 Cco-Chr6:24685348 4.10E-111 dispersed
Cco06g1297 Cco-Chr6:23194179 Cco08g1342 Cco-Chr8:25286084 3.30E-169 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86924 PF00069 Pkinase 1.60E-72 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1297 - - - 0.0