Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1303 | ATGGCGGCCAGTTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTCCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGCTAGGCAAAAGAAGGTGACAAACAAAGAGAAGAAATATTGGATTCAGAAAATTGAAAGGATTGATAAGCTCGAAAGTCAGCAAAACCTCAGTGCAATCGACAGTGCTTGTAGAACCTCTTTGAAAATCGATCTCAGCACCGAAGCCGCTAGAGAAGCTCAATTTTGGGCTTAA | 708 | 42.66 | MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDARQKKVTNKEKKYWIQKIERIDKLESQQNLSAIDSACRTSLKIDLSTEAAREAQFWA | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 23255525 | 23262376 | - | CcPI632755_06g013030.1 | Cco06g1303 | 181903 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1303 | 235 | SUPERFAMILY | HMG-box | 108 | 159 | IPR036910 | - | |
Cco06g1303 | 235 | CDD | HMG-box_SF | 120 | 198 | - | - | |
Cco06g1303 | 235 | PANTHER | PROTEIN YABBY 6-RELATED | 10 | 175 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
Cco06g1303 | 235 | FunFam | axial regulator YABBY 5-like | 104 | 162 | - | - | |
Cco06g1303 | 235 | Pfam | YABBY protein | 9 | 166 | IPR006780 | GO:0007275(InterPro) | |
Cco06g1303 | 235 | Gene3D | High mobility group box domain | 112 | 210 | IPR036910 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2409 | Cco-Chr2:36471252 | Cco06g1303 | Cco-Chr6:23255525 | 1.10E-46 | dispersed | |
Cco05g2813 | Cco-Chr5:35829198 | Cco06g1303 | Cco-Chr6:23255525 | 6.20E-32 | dispersed | |
Cco06g1303 | Cco-Chr6:23255525 | Cco10g0299 | Cco-Chr10:3552306 | 2.10E-37 | dispersed | |
Cco05g2631 | Cco-Chr5:34458203 | Cco06g1303 | Cco-Chr6:23255525 | 2.50E-30 | transposed | |
Cco05g2647 | Cco-Chr5:34584211 | Cco06g1303 | Cco-Chr6:23255525 | 3.10E-30 | transposed | |
Cco11g0329 | Cco-Chr11:3311911 | Cco06g1303 | Cco-Chr6:23255525 | 1.20E-70 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59509 | PF04690 | YABBY | 1.90E-69 | CL0114 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1303 | K25796 | - | csv:101215951 | 342.813 |