Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1303 ATGGCGGCCAGTTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTCCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGTAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGCTAGGCAAAAGAAGGTGACAAACAAAGAGAAGAAATATTGGATTCAGAAAATTGAAAGGATTGATAAGCTCGAAAGTCAGCAAAACCTCAGTGCAATCGACAGTGCTTGTAGAACCTCTTTGAAAATCGATCTCAGCACCGAAGCCGCTAGAGAAGCTCAATTTTGGGCTTAA 708 42.66 MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDARQKKVTNKEKKYWIQKIERIDKLESQQNLSAIDSACRTSLKIDLSTEAAREAQFWA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23255525 23262376 - CcPI632755_06g013030.1 Cco06g1303 181903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1303 235 SUPERFAMILY HMG-box 108 159 IPR036910 -
Cco06g1303 235 CDD HMG-box_SF 120 198 - -
Cco06g1303 235 PANTHER PROTEIN YABBY 6-RELATED 10 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cco06g1303 235 FunFam axial regulator YABBY 5-like 104 162 - -
Cco06g1303 235 Pfam YABBY protein 9 166 IPR006780 GO:0007275(InterPro)
Cco06g1303 235 Gene3D High mobility group box domain 112 210 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2409 Cco-Chr2:36471252 Cco06g1303 Cco-Chr6:23255525 1.10E-46 dispersed
Cco05g2813 Cco-Chr5:35829198 Cco06g1303 Cco-Chr6:23255525 6.20E-32 dispersed
Cco06g1303 Cco-Chr6:23255525 Cco10g0299 Cco-Chr10:3552306 2.10E-37 dispersed
Cco05g2631 Cco-Chr5:34458203 Cco06g1303 Cco-Chr6:23255525 2.50E-30 transposed
Cco05g2647 Cco-Chr5:34584211 Cco06g1303 Cco-Chr6:23255525 3.10E-30 transposed
Cco11g0329 Cco-Chr11:3311911 Cco06g1303 Cco-Chr6:23255525 1.20E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59509 PF04690 YABBY 1.90E-69 CL0114 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1303 K25796 - csv:101215951 342.813