Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1321 ATGGAGAAAAGGTGTGGTTGTTGGGCTGTTTTGACTCGTACTGTTTCTGGTGTTTGCAAATCCTCTGCTTCTAGAGACTCTCCAAACACCATTCCTCGAACTAGCCTAGTTTATGGTTCTGCTACTGAAACACGGTATTTAAATGCTAGCAACAGGGATCTCTGTACCTTGAATGATGCTGAGCTGGCCTCTGGTAATGCCAATCCATCAGAATCAGATAACAAAACAGCAAGCAAACTGCTTCAGTTCTCTTATCATGAGCTCAAGGCAGCAACAGGAAACTTTAGACCTGATAGTATTCTTGGGGAAGGTGGATTTGGATTTGTCTTTAAAGGATGGATTGAAGAGAATGGGACAGCCCCTGCAAAACCTGGATCAGGAATTACGGTAGCTGTTAAGAGCTTGAAACTAGATGGTCTTCAAGGCCACAGAGAATGGGTGGCTGAGGTTGCCTTTCTCGGACAACTTCACCATCCAAATCTTGTTAAGCTTATAGGTTACTGTAACGAAGATGATCTACGTTTGCTTGTTTACGAGTTTATGAGCCGTGGAAGTCTTGAGAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCCAATAGGATCAAGATTGCCCTTGGAGCGGCGAAAGGATTGGCCTTTCTTCATAATGGCCCAGTACCTGTAATCTATAGAGATTTTAAGACATCCAATATCTTGCTTGATTCGGATTACAATGCAAAGCTTTCGGATTTTGGTTTTGCAAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAATTGGGACATATGGCTATGCTGCTCCTGAATATGTAATGACAGGGCATCTGACATCGAAGAATGATGTTTATAGCTTTGGTGTTGTGCTTCTTGAGATCGTAACAGGGAGAAGATCCATGGACAAGAAACGTCCGAGTGGTGAACAAAACCTTGTCTCATGGGCTCGACCATATTTAGCTGATAAAAGAAAGATATATCATATAGTGGATCCCCGCTTGGAATTCAACTATTCCATAAAAGGGGTGCAAAAGGTCTCGCAGCTTGCTTGCAGTTGCCTCAGCAGGGACCCAAAACTACGTCCAACCATGGACGAAGTCGTGAAGATTCTGACTCCACTACAAGATCTCAACGACCTCGCCATCCTAACATCTCACTGCCGCTCATCTTCACAAGGGAGGCGCAAGAAGAAACCCGAAGGCCTAACCTACACCCAAAGCTTCAGAGCTTCTCCATTGAACACTGGAAAGCAGCATGTAAGGTGA 1275 44.39 MEKRCGCWAVLTRTVSGVCKSSASRDSPNTIPRTSLVYGSATETRYLNASNRDLCTLNDAELASGNANPSESDNKTASKLLQFSYHELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKLDGLQGHREWVAEVAFLGQLHHPNLVKLIGYCNEDDLRLLVYEFMSRGSLENHLFRRTIPLPWSNRIKIALGAAKGLAFLHNGPVPVIYRDFKTSNILLDSDYNAKLSDFGFAKAGPQGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKNDVYSFGVVLLEIVTGRRSMDKKRPSGEQNLVSWARPYLADKRKIYHIVDPRLEFNYSIKGVQKVSQLACSCLSRDPKLRPTMDEVVKILTPLQDLNDLAILTSHCRSSSQGRRKKKPEGLTYTQSFRASPLNTGKQHVR 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23481554 23484592 - CcPI632755_06g013210.1 Cco06g1321 181921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1321 424 FunFam Probable serine/threonine-protein kinase PBL8 181 394 - -
Cco06g1321 424 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1321 424 SUPERFAMILY Protein kinase-like (PK-like) 78 385 IPR011009 -
Cco06g1321 424 Gene3D Transferase(Phosphotransferase) domain 1 181 391 - -
Cco06g1321 424 CDD STKc_IRAK 101 377 - -
Cco06g1321 424 Gene3D Phosphorylase Kinase; domain 1 69 180 - -
Cco06g1321 424 MobiDBLite consensus disorder prediction 407 424 - -
Cco06g1321 424 PANTHER OS01G0588500 PROTEIN-RELATED 70 378 IPR050823 -
Cco06g1321 424 FunFam Serine/threonine-protein kinase BIK1 63 180 - -
Cco06g1321 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1321 424 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524(InterPro)
Cco06g1321 424 MobiDBLite consensus disorder prediction 391 424 - -
Cco06g1321 424 ProSiteProfiles Protein kinase domain profile. 95 378 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2725 Cco-Chr5:35145913 Cco06g1321 Cco-Chr6:23481554 2.00E-138 dispersed
Cco06g1321 Cco-Chr6:23481554 Cco09g2041 Cco-Chr9:34783914 1.30E-138 dispersed
Cco11g0344 Cco-Chr11:3497078 Cco06g1321 Cco-Chr6:23481554 2.40E-196 wgd
Cco06g1321 Cco-Chr6:23481554 Cco09g0308 Cco-Chr9:2686711 1.00E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86926 PF00069 Pkinase 4.80E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1321 - - - 0.0