Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1385 | ATGAATCCTAATGAGGAACGGAGTGTGGGTCAATGTCGAAACTCGTTGAAACGGAAAAAAGAAACGCTGCTTCGAAGGTCTAGGCGAAGTCATTCGAAGTGGGTTTTCACGTCGGTGGCTAGCCCCGCCAATGGACGTCTATCGTCGTTGGTCGCGTGGTGGTTCGTCGTTCGCCGAAAGAGAAGCGTGACGGAGAGAGGAAAAACTATGCCGCTCGTGCGCGTCGGCCGGACCTGTCCGCGCGTGGAGTGGCTGCGGCTGCTCCCGTTAACCGCCTGTTCTCTCTCTCCCTTCACCCGCTCGCTCACTCACGCCCACGCAAGGGAAAAAAAAACCCCTCTCCTTGTACGCTTCTATCTTGAGAAGCCGCTCGCCTCCGTCCAACTGCCGCCACCGTCAACTGGAGTCCGCCGCCGCCTCGTCACCGCTGACGTTCACTCCCACAGGTTCGCCGCCACCGTTAAGTCGCCGCTGTTCGTCCTCGAGCCGCCGCCAAATTCGGTGTTGTGCTGGGTTGCAAGGGACTTTGAGTTTATCGTTAAGGGAGGGCTTATGTTTGAAAATTCTTGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACCTTCGAAACTGAATTAGGTGGTGTCATTCCGGTTGTTAAAGCATCTATTGATGGCACTCGCATTATTGGCCGCCTTTGTGCTGGAAACAAAAATGGACTTCTTGTACCACACACCACTACTGACCAAGAACTTCAGCATTTGAGGAACAGTCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTGTCTGCTTTGGGGAATACAATTGCTTGTAACGATCATGTTGCTCTCACACATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCAGGCAACGTTCTTGTGGGAAGCTACTGTAATTTCACGAATAGGGGCGGCTTGGTTCATCCACATACATCTGTTGAAGATTTGGATGAGCTATCCACCCTTCTTCAAGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGACTGGACTGCATTTTGTGGTTCTGACACCACTGCCACCGAGTTATCGGTCATTGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGACAGTTATGTGTGA | 1275 | 50.12 | MNPNEERSVGQCRNSLKRKKETLLRRSRRSHSKWVFTSVASPANGRLSSLVAWWFVVRRKRSVTERGKTMPLVRVGRTCPRVEWLRLLPLTACSLSPFTRSLTHAHAREKKTPLLVRFYLEKPLASVQLPPPSTGVRRRLVTADVHSHRFAATVKSPLFVLEPPPNSVLCWVARDFEFIVKGGLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24341633 | 24353628 | + | CcPI632755_06g013850.1 | Cco06g1385 | 181985 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1385 | 424 | SUPERFAMILY | Pentein | 186 | 403 | - | - | |
Cco06g1385 | 424 | SMART | eIF6neu2 | 184 | 383 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Cco06g1385 | 424 | Hamap | Translation initiation factor 6 [eif6]. | 168 | 424 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Cco06g1385 | 424 | FunFam | Eukaryotic translation initiation factor 6 | 181 | 404 | - | - | |
Cco06g1385 | 424 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 | 184 | 423 | IPR002769 | GO:0000054(PANTHER)|GO:0000460(PANTHER)|GO:0000470(PANTHER)|GO:0005730(PANTHER)|GO:0005829(PANTHER)|GO:0030687(PANTHER)|GO:0042256(InterPro)|GO:0043022(InterPro)|GO:0043023(PANTHER)|GO:1902626(PANTHER) | |
Cco06g1385 | 424 | CDD | IF6 | 186 | 402 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Cco06g1385 | 424 | Gene3D | - | 183 | 404 | - | - | |
Cco06g1385 | 424 | NCBIfam | translation initiation factor IF-6 | 185 | 403 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) | |
Cco06g1385 | 424 | Pfam | eIF-6 family | 185 | 382 | IPR002769 | GO:0042256(InterPro)|GO:0043022(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0024 | Cco-Chr2:289626 | Cco06g1385 | Cco-Chr6:24341633 | 2.20E-134 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1385 | K03264 | - | csv:101207707 | 456.447 |