Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1385 ATGAATCCTAATGAGGAACGGAGTGTGGGTCAATGTCGAAACTCGTTGAAACGGAAAAAAGAAACGCTGCTTCGAAGGTCTAGGCGAAGTCATTCGAAGTGGGTTTTCACGTCGGTGGCTAGCCCCGCCAATGGACGTCTATCGTCGTTGGTCGCGTGGTGGTTCGTCGTTCGCCGAAAGAGAAGCGTGACGGAGAGAGGAAAAACTATGCCGCTCGTGCGCGTCGGCCGGACCTGTCCGCGCGTGGAGTGGCTGCGGCTGCTCCCGTTAACCGCCTGTTCTCTCTCTCCCTTCACCCGCTCGCTCACTCACGCCCACGCAAGGGAAAAAAAAACCCCTCTCCTTGTACGCTTCTATCTTGAGAAGCCGCTCGCCTCCGTCCAACTGCCGCCACCGTCAACTGGAGTCCGCCGCCGCCTCGTCACCGCTGACGTTCACTCCCACAGGTTCGCCGCCACCGTTAAGTCGCCGCTGTTCGTCCTCGAGCCGCCGCCAAATTCGGTGTTGTGCTGGGTTGCAAGGGACTTTGAGTTTATCGTTAAGGGAGGGCTTATGTTTGAAAATTCTTGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACCTTCGAAACTGAATTAGGTGGTGTCATTCCGGTTGTTAAAGCATCTATTGATGGCACTCGCATTATTGGCCGCCTTTGTGCTGGAAACAAAAATGGACTTCTTGTACCACACACCACTACTGACCAAGAACTTCAGCATTTGAGGAACAGTCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTGTCTGCTTTGGGGAATACAATTGCTTGTAACGATCATGTTGCTCTCACACATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCAGGCAACGTTCTTGTGGGAAGCTACTGTAATTTCACGAATAGGGGCGGCTTGGTTCATCCACATACATCTGTTGAAGATTTGGATGAGCTATCCACCCTTCTTCAAGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGACTGGACTGCATTTTGTGGTTCTGACACCACTGCCACCGAGTTATCGGTCATTGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGACAGTTATGTGTGA 1275 50.12 MNPNEERSVGQCRNSLKRKKETLLRRSRRSHSKWVFTSVASPANGRLSSLVAWWFVVRRKRSVTERGKTMPLVRVGRTCPRVEWLRLLPLTACSLSPFTRSLTHAHAREKKTPLLVRFYLEKPLASVQLPPPSTGVRRRLVTADVHSHRFAATVKSPLFVLEPPPNSVLCWVARDFEFIVKGGLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKASIDGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24341633 24353628 + CcPI632755_06g013850.1 Cco06g1385 181985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1385 424 SUPERFAMILY Pentein 186 403 - -
Cco06g1385 424 SMART eIF6neu2 184 383 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cco06g1385 424 Hamap Translation initiation factor 6 [eif6]. 168 424 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cco06g1385 424 FunFam Eukaryotic translation initiation factor 6 181 404 - -
Cco06g1385 424 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 184 423 IPR002769 GO:0000054(PANTHER)|GO:0000460(PANTHER)|GO:0000470(PANTHER)|GO:0005730(PANTHER)|GO:0005829(PANTHER)|GO:0030687(PANTHER)|GO:0042256(InterPro)|GO:0043022(InterPro)|GO:0043023(PANTHER)|GO:1902626(PANTHER)
Cco06g1385 424 CDD IF6 186 402 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cco06g1385 424 Gene3D - 183 404 - -
Cco06g1385 424 NCBIfam translation initiation factor IF-6 185 403 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cco06g1385 424 Pfam eIF-6 family 185 382 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0024 Cco-Chr2:289626 Cco06g1385 Cco-Chr6:24341633 2.20E-134 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1385 K03264 - csv:101207707 456.447