Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g1388 ATGGCATTTGATCAGAACGCAATTCCCACAGGCTTGCGGCCTTTAAATGTAGCTAGACCTTTAGTTGAAGATCCCCATTTAACCCCGGTCGCTTCTACTGGTCGAAACCCGCAAAGGTTTACCCCCCAGCATCCCTGCGACGTTGCCAGTGCAGACACTGTGCCCGTTCCTGGTAAGGGGAACGTCTCTGATAAAGGTTTTTTGGAGCTAGGATATCGAAATGTGGTTGCTGGTGTTACTGCATGGTGCCCTCGAATGCCTCCTCCCTTTACACATACTGCAACAATTCCTGCCGTAGGGTTTGGTTACTGCTCTGATCTGAATGTCATGGGCAACCGTGGTGGTGCCAATGCTGTTGAGCTTGCTAGCAGTTGCATGACAGTTGGGATTAACCATAGTACAAATTCGAGTCATCGATTTGGGGGAGGTGGCTTGGAATTTGTGAGCAATAATATCTCAATGGGGTCTGGAGATAGTGCCAATTTATGCAATAAGGTAACTGCCAATGGTGATCAGATTAATAGTGATAGTACTTCTGGATTTAGCTCCCACTTGAGGAATTCGGTTGATGGGAGTGCGGTTGATCAAGTGAGCGAGGAGGGTGGAGATGGTTCCATTTCGAAAAAGAAAGTTAAGTTTATGTGCAGTTTTGGTGGCAAGATTTTTCCTAGACCAAGTGATGGTATGTTGAGATACATTGGAGGCCAAACAAGGATTATAAGTGTTAGGAGAGACGTGACTTTCAGTGAGCTTGTACGAAAGATGGTTGATACCTGTGGGCAGGCTGTGGTTATAAAGTATCAGCTCCCCGACGAGGATCTTGATGCTTTAATATCTGTTTCATGCCCTGATGATCTTGATAATATGATGGATGAGTATGAGAAGCTGGTTGAGAGATCTTCAGATGGATCGGCTAAATTGAGGATGTTTCTGTTCTCTGCTTCAGAACTTGACTCTTCAGGTATGGTGCAATTTGGCGATTTGCACGATAGTGGGCAGAGATATGTTGAAACAGTGAATGGGATGTTTGATGGCGTTGGTGGCCGTATTACAAGGAAAGAGAGCTTTGCAAGTGCTACCTCAACTCAAAATTCTGACTTAAGTGGGACTGAGGCGATGGATATCGCAAATAATGATCTAGGGGGGGTTGTGAGTGGGCCTCCATCCACAACACCGTCCTTACCTGGAGGAAATTTAGGTACTGCAGTTGCTATTGGCCCTGGATTACTGAAAGTAGATCCTGTCTCTGCAGTTTTTGTAGACGCCTCTGCTGTTCCATCAAGTATTCCTGTGCTTAACTCTGTTCCTCCTGAAGCTTCTTCGCAGCCTGAGGCGGAGTTAGGAAGGTCTGTGCCTGTTACTCTAATGCAGCAGCAACCAGGTATTGACTTTCCCCCACCTGTGTCTCAATTGCAGCCTACTGGTGATCCTCGGCAAGCAGCATGTGTGGACTTTGTACAATTTCGTCCACAACTTGGCTTTTCAAACTCCCATCATTTAGGGGCATCTGGGTCTATGTTTATACAACAGCCAAATACTCTTGGAATTACCCCTACTCAGTTTGTCCCTGCAGTTCACATGACGATGGCTCCCTCTTCTTCTCACCTCAGTACTATGCCAAATACCTACCAATCGTTGGTTCAATATCCACGATCCCAGATGGATTATTTTTCCAACGCAAGCACATTTGGTCCAAGGTTTGTCCAGCTATCTGCAGAACAAGGCTACAACTCACTCCAGGTTCCTGCTCCTCCAGTATCAGTAGGGGTTGGGTTTGGTTTACATCAGGTACCACAGTCTGATCAGACAGTTACGTCTGATGAATTGGTATCCCATCATCGGGCAGCTTTTTCTGAGAAGATCGAGAGGTTGGATGGCTGTTACTTCTGCCAGAAAGCAGTGCCACATGCTCATTCCAATTCTCCGTTGCAGGATCAAAGAGAAAATTTGACGAACCCTGTATCTGATTCAAAGTTTTCGTATTACAGTCATCACCCTGAAGATCATTTAACAGCCCATCCAATGAAAAATATTACAGAAACTGGAGCTTTGAGGCAACAAACTACTGACCATGGTGTTGGAATGCAAACCAGGATCTTTAATCCCATGGATCCAGAAGTTGAAAAACCTTCAGTGGAAGCTATTAGCTTCCCACGTCGTATTGAGGGTCAACACGAGAATGACAACACTCTTAAAGATCAGCATAATCTTGATCATGGTAGGATCTCAGCTCTGCAGGGTGATATTCGGTCACCCCATGTTGCTGTTGTAGAACAGATTTGTCAGTCTGGTGAAGTTGATACTCTCCAGCACCACTATGTAGCTGTAGAGAAGCAGTTCCGTTCAAATTTAGTCCTGGATAAACACGATGTTTGCGTTGTAGGTGCTCCTATCCTTGCTTCAGAGTACAACACTCACGAAAATTCAAATGAGTACTCTAATAGTCATCATGGCATTATTCCAAACCAAAATGCCACTCACACTGGAATTTGTTACGACCATCTCAGACCAATTGTTGGAAATTTGGAAAGTTCAAGTATATGCCCATCTGATATTTGTGCTAATTTGGATCACTGCAAATCACCCATTGAAGGAACTAGGAAGGAGGACAATTTTGGCAGCTGTTCACAACCAGTCTCAGAGAGGGAAGTTCTACTAGATAACAACTTTGTAAAGCCAATGGTGGTTCTCGACCCAAATAACGTAAAGCCAACTACTTTTGCTTGCTCTTCATCAGAGGTTCCCTATTTGATGAATGAACGACCTGTTGAGTCCAGTGAAGTGGCACAACCTCCTGTCAGGGGCTCTCCCGGAACATTACCACAAGCTGAAAATGGGATGCAACATTTAGAATCCAATGAAGTCTGTCATAGCAGAAATCCCCACTTATTTGACATGAAGACCGAACATATAAACAATGGAGTCCCTGTTTCTGCTGAGTGGAAGGAGGACACTTCTCTATTGGAAACTAGGATGGTATCTGGTGATGTTGAATCCGTTTCTTTGCCTATCAGGACTGGAAATATGCAGGACACTGCAAATTCACTCTTCAGTAATCAGGATCCTTGGAACTTACAGCATGATGCTCATTTTTTGCCGCCTAGACCAACTAAAATTCAACCGAGGAATGAAGCCCTTGCCTCCAGGGAACCCTTGACAGAGAGTCCTTTCAGGAATATTGGTGAACCAAATGTGGAAACAATTCTGGATGATGGAGTATGTCACCCATTGGTTAACTCAAACAAGGGCTCTTCAGAGGAACAAATTAGGAAAGATCTTCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAGTCAGCTCAATCCTCCAGCTCTGAATTGCATGAAAGAATTGATCCAGTTTGTGAGACTATCACCGAAGGAGATGTTCAAAATAATGATGATGGCAGGACAAGACATTCAGAAAAACCAAACCTTGGTTTTCCAATGTCAGAAGGCTTTGGCCGCTTGCAGGTAATAAAGAATAGTGACCTTGAAGAACTAAGAGAATTAGGTTCTGGCACTTTTGGCACTGTTTATCATGGAAAGTGGAGGGGGACTGATGTTGCTATCAAACGAGTCAATGATAGGTGTTTTGCTGGGAAACCATCTGAACAAGATCGCATGAGAGAGGACTTTTGGAATGAAGCAATTAAGCTTGCTGATTTGCACCACCCAAATGTGGTTGCTTTTTACGGTGTTGTGCTTGATGGCCCTGGGGGCTCTGTGGCAACAGTAACAGAATATATGGTTAATGGGTCGCTCAGAAATGCTTTGTTGAAGAATGAAAGGAGTCTTGACAAGCGTAAGCGTCTCTTGATTGCTATGGATGCAGCTTTTGGAATGGAATACCTGCACAGAAAGAATATAGTGCACTTTGATTTGAAAAGTGATAATCTGCTGGTCAACCTTCGAGATCCTCATCGCCCAATATGCAAGGTTGGTGACTTGGGCCTATCGAAGGTGAAACGTCAGACATTGATATCAGGTGGTGTGCGGGGAACACTTCCATGGATGGCACCCGAGCTTTTGAATGGGAGCAGCAATATGGTGTCCGAGAAGGTTGATGTGTTCTCCTTTGGTATTGTCTTGTGGGAGCTCCTTACTGGAGAAGAGCCCTACGCAAATTTGCATTATGGGATTATCATAGGTGGCATAGTAAGCAACACGTTGCGACCTGAAGTTCCAGAATCTTGTGATCCAGAATGGAGGTCATTGATGGAGAGATGCTGGTCATCTGAGCCGTCAGAGAGGCCAAGCTTCACTGAAATTGCACATGAATTGCGGTCCATGGCTACTAAGGTTCCTCCGAAAATACCCAACCATCCACAGTAG 4338 44.79 MAFDQNAIPTGLRPLNVARPLVEDPHLTPVASTGRNPQRFTPQHPCDVASADTVPVPGKGNVSDKGFLELGYRNVVAGVTAWCPRMPPPFTHTATIPAVGFGYCSDLNVMGNRGGANAVELASSCMTVGINHSTNSSHRFGGGGLEFVSNNISMGSGDSANLCNKVTANGDQINSDSTSGFSSHLRNSVDGSAVDQVSEEGGDGSISKKKVKFMCSFGGKIFPRPSDGMLRYIGGQTRIISVRRDVTFSELVRKMVDTCGQAVVIKYQLPDEDLDALISVSCPDDLDNMMDEYEKLVERSSDGSAKLRMFLFSASELDSSGMVQFGDLHDSGQRYVETVNGMFDGVGGRITRKESFASATSTQNSDLSGTEAMDIANNDLGGVVSGPPSTTPSLPGGNLGTAVAIGPGLLKVDPVSAVFVDASAVPSSIPVLNSVPPEASSQPEAELGRSVPVTLMQQQPGIDFPPPVSQLQPTGDPRQAACVDFVQFRPQLGFSNSHHLGASGSMFIQQPNTLGITPTQFVPAVHMTMAPSSSHLSTMPNTYQSLVQYPRSQMDYFSNASTFGPRFVQLSAEQGYNSLQVPAPPVSVGVGFGLHQVPQSDQTVTSDELVSHHRAAFSEKIERLDGCYFCQKAVPHAHSNSPLQDQRENLTNPVSDSKFSYYSHHPEDHLTAHPMKNITETGALRQQTTDHGVGMQTRIFNPMDPEVEKPSVEAISFPRRIEGQHENDNTLKDQHNLDHGRISALQGDIRSPHVAVVEQICQSGEVDTLQHHYVAVEKQFRSNLVLDKHDVCVVGAPILASEYNTHENSNEYSNSHHGIIPNQNATHTGICYDHLRPIVGNLESSSICPSDICANLDHCKSPIEGTRKEDNFGSCSQPVSEREVLLDNNFVKPMVVLDPNNVKPTTFACSSSEVPYLMNERPVESSEVAQPPVRGSPGTLPQAENGMQHLESNEVCHSRNPHLFDMKTEHINNGVPVSAEWKEDTSLLETRMVSGDVESVSLPIRTGNMQDTANSLFSNQDPWNLQHDAHFLPPRPTKIQPRNEALASREPLTESPFRNIGEPNVETILDDGVCHPLVNSNKGSSEEQIRKDLQAVAEGVAASVLQSAQSSSSELHERIDPVCETITEGDVQNNDDGRTRHSEKPNLGFPMSEGFGRLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRVNDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALLKNERSLDKRKRLLIAMDAAFGMEYLHRKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKRQTLISGGVRGTLPWMAPELLNGSSNMVSEKVDVFSFGIVLWELLTGEEPYANLHYGIIIGGIVSNTLRPEVPESCDPEWRSLMERCWSSEPSERPSFTEIAHELRSMATKVPPKIPNHPQ 1445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24375725 24383009 + CcPI632755_06g013880.1 Cco06g1388 181988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g1388 1445 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1254 1445 - -
Cco06g1388 1445 MobiDBLite consensus disorder prediction 1128 1149 - -
Cco06g1388 1445 Pfam Protein tyrosine and serine/threonine kinase 1168 1429 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1388 1445 SMART serkin_6 1166 1432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1388 1445 CDD PB1_UP2 214 312 - -
Cco06g1388 1445 Gene3D Phosphorylase Kinase; domain 1 1159 1253 - -
Cco06g1388 1445 SUPERFAMILY CAD & PB1 domains 226 318 - -
Cco06g1388 1445 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 230 314 - -
Cco06g1388 1445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1291 1303 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1388 1445 SMART PB1_new 225 314 IPR000270 GO:0005515(InterPro)
Cco06g1388 1445 Pfam PB1 domain 230 313 IPR000270 GO:0005515(InterPro)
Cco06g1388 1445 SUPERFAMILY Protein kinase-like (PK-like) 1157 1427 IPR011009 -
Cco06g1388 1445 Gene3D - 232 314 - -
Cco06g1388 1445 PANTHER SERINE-THREONINE PROTEIN KINASE 173 1432 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco06g1388 1445 ProSitePatterns Protein kinases ATP-binding region signature. 1172 1203 IPR017441 GO:0005524(InterPro)
Cco06g1388 1445 ProSiteProfiles Protein kinase domain profile. 1166 1430 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g1388 1445 CDD STKc_MAP3K-like 1172 1429 - -
Cco06g1388 1445 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1159 1253 - -
Cco06g1388 1445 PRINTS Tyrosine kinase catalytic domain signature 1400 1422 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1388 1445 PRINTS Tyrosine kinase catalytic domain signature 1285 1303 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1388 1445 PRINTS Tyrosine kinase catalytic domain signature 1248 1261 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1388 1445 PRINTS Tyrosine kinase catalytic domain signature 1356 1378 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g1388 1445 Gene3D Transferase(Phosphotransferase) domain 1 1254 1442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1388 Cco-Chr6:24375725 Cco11g1297 Cco-Chr11:25531318 6.20E-140 dispersed
Cco06g1388 Cco-Chr6:24375725 Cco03g0422 Cco-Chr3:4527491 1.30E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86928 PF07714 PK_Tyr_Ser-Thr 6.80E-60 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g1388 - - - 0.0