Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g1388 | ATGGCATTTGATCAGAACGCAATTCCCACAGGCTTGCGGCCTTTAAATGTAGCTAGACCTTTAGTTGAAGATCCCCATTTAACCCCGGTCGCTTCTACTGGTCGAAACCCGCAAAGGTTTACCCCCCAGCATCCCTGCGACGTTGCCAGTGCAGACACTGTGCCCGTTCCTGGTAAGGGGAACGTCTCTGATAAAGGTTTTTTGGAGCTAGGATATCGAAATGTGGTTGCTGGTGTTACTGCATGGTGCCCTCGAATGCCTCCTCCCTTTACACATACTGCAACAATTCCTGCCGTAGGGTTTGGTTACTGCTCTGATCTGAATGTCATGGGCAACCGTGGTGGTGCCAATGCTGTTGAGCTTGCTAGCAGTTGCATGACAGTTGGGATTAACCATAGTACAAATTCGAGTCATCGATTTGGGGGAGGTGGCTTGGAATTTGTGAGCAATAATATCTCAATGGGGTCTGGAGATAGTGCCAATTTATGCAATAAGGTAACTGCCAATGGTGATCAGATTAATAGTGATAGTACTTCTGGATTTAGCTCCCACTTGAGGAATTCGGTTGATGGGAGTGCGGTTGATCAAGTGAGCGAGGAGGGTGGAGATGGTTCCATTTCGAAAAAGAAAGTTAAGTTTATGTGCAGTTTTGGTGGCAAGATTTTTCCTAGACCAAGTGATGGTATGTTGAGATACATTGGAGGCCAAACAAGGATTATAAGTGTTAGGAGAGACGTGACTTTCAGTGAGCTTGTACGAAAGATGGTTGATACCTGTGGGCAGGCTGTGGTTATAAAGTATCAGCTCCCCGACGAGGATCTTGATGCTTTAATATCTGTTTCATGCCCTGATGATCTTGATAATATGATGGATGAGTATGAGAAGCTGGTTGAGAGATCTTCAGATGGATCGGCTAAATTGAGGATGTTTCTGTTCTCTGCTTCAGAACTTGACTCTTCAGGTATGGTGCAATTTGGCGATTTGCACGATAGTGGGCAGAGATATGTTGAAACAGTGAATGGGATGTTTGATGGCGTTGGTGGCCGTATTACAAGGAAAGAGAGCTTTGCAAGTGCTACCTCAACTCAAAATTCTGACTTAAGTGGGACTGAGGCGATGGATATCGCAAATAATGATCTAGGGGGGGTTGTGAGTGGGCCTCCATCCACAACACCGTCCTTACCTGGAGGAAATTTAGGTACTGCAGTTGCTATTGGCCCTGGATTACTGAAAGTAGATCCTGTCTCTGCAGTTTTTGTAGACGCCTCTGCTGTTCCATCAAGTATTCCTGTGCTTAACTCTGTTCCTCCTGAAGCTTCTTCGCAGCCTGAGGCGGAGTTAGGAAGGTCTGTGCCTGTTACTCTAATGCAGCAGCAACCAGGTATTGACTTTCCCCCACCTGTGTCTCAATTGCAGCCTACTGGTGATCCTCGGCAAGCAGCATGTGTGGACTTTGTACAATTTCGTCCACAACTTGGCTTTTCAAACTCCCATCATTTAGGGGCATCTGGGTCTATGTTTATACAACAGCCAAATACTCTTGGAATTACCCCTACTCAGTTTGTCCCTGCAGTTCACATGACGATGGCTCCCTCTTCTTCTCACCTCAGTACTATGCCAAATACCTACCAATCGTTGGTTCAATATCCACGATCCCAGATGGATTATTTTTCCAACGCAAGCACATTTGGTCCAAGGTTTGTCCAGCTATCTGCAGAACAAGGCTACAACTCACTCCAGGTTCCTGCTCCTCCAGTATCAGTAGGGGTTGGGTTTGGTTTACATCAGGTACCACAGTCTGATCAGACAGTTACGTCTGATGAATTGGTATCCCATCATCGGGCAGCTTTTTCTGAGAAGATCGAGAGGTTGGATGGCTGTTACTTCTGCCAGAAAGCAGTGCCACATGCTCATTCCAATTCTCCGTTGCAGGATCAAAGAGAAAATTTGACGAACCCTGTATCTGATTCAAAGTTTTCGTATTACAGTCATCACCCTGAAGATCATTTAACAGCCCATCCAATGAAAAATATTACAGAAACTGGAGCTTTGAGGCAACAAACTACTGACCATGGTGTTGGAATGCAAACCAGGATCTTTAATCCCATGGATCCAGAAGTTGAAAAACCTTCAGTGGAAGCTATTAGCTTCCCACGTCGTATTGAGGGTCAACACGAGAATGACAACACTCTTAAAGATCAGCATAATCTTGATCATGGTAGGATCTCAGCTCTGCAGGGTGATATTCGGTCACCCCATGTTGCTGTTGTAGAACAGATTTGTCAGTCTGGTGAAGTTGATACTCTCCAGCACCACTATGTAGCTGTAGAGAAGCAGTTCCGTTCAAATTTAGTCCTGGATAAACACGATGTTTGCGTTGTAGGTGCTCCTATCCTTGCTTCAGAGTACAACACTCACGAAAATTCAAATGAGTACTCTAATAGTCATCATGGCATTATTCCAAACCAAAATGCCACTCACACTGGAATTTGTTACGACCATCTCAGACCAATTGTTGGAAATTTGGAAAGTTCAAGTATATGCCCATCTGATATTTGTGCTAATTTGGATCACTGCAAATCACCCATTGAAGGAACTAGGAAGGAGGACAATTTTGGCAGCTGTTCACAACCAGTCTCAGAGAGGGAAGTTCTACTAGATAACAACTTTGTAAAGCCAATGGTGGTTCTCGACCCAAATAACGTAAAGCCAACTACTTTTGCTTGCTCTTCATCAGAGGTTCCCTATTTGATGAATGAACGACCTGTTGAGTCCAGTGAAGTGGCACAACCTCCTGTCAGGGGCTCTCCCGGAACATTACCACAAGCTGAAAATGGGATGCAACATTTAGAATCCAATGAAGTCTGTCATAGCAGAAATCCCCACTTATTTGACATGAAGACCGAACATATAAACAATGGAGTCCCTGTTTCTGCTGAGTGGAAGGAGGACACTTCTCTATTGGAAACTAGGATGGTATCTGGTGATGTTGAATCCGTTTCTTTGCCTATCAGGACTGGAAATATGCAGGACACTGCAAATTCACTCTTCAGTAATCAGGATCCTTGGAACTTACAGCATGATGCTCATTTTTTGCCGCCTAGACCAACTAAAATTCAACCGAGGAATGAAGCCCTTGCCTCCAGGGAACCCTTGACAGAGAGTCCTTTCAGGAATATTGGTGAACCAAATGTGGAAACAATTCTGGATGATGGAGTATGTCACCCATTGGTTAACTCAAACAAGGGCTCTTCAGAGGAACAAATTAGGAAAGATCTTCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAGTCAGCTCAATCCTCCAGCTCTGAATTGCATGAAAGAATTGATCCAGTTTGTGAGACTATCACCGAAGGAGATGTTCAAAATAATGATGATGGCAGGACAAGACATTCAGAAAAACCAAACCTTGGTTTTCCAATGTCAGAAGGCTTTGGCCGCTTGCAGGTAATAAAGAATAGTGACCTTGAAGAACTAAGAGAATTAGGTTCTGGCACTTTTGGCACTGTTTATCATGGAAAGTGGAGGGGGACTGATGTTGCTATCAAACGAGTCAATGATAGGTGTTTTGCTGGGAAACCATCTGAACAAGATCGCATGAGAGAGGACTTTTGGAATGAAGCAATTAAGCTTGCTGATTTGCACCACCCAAATGTGGTTGCTTTTTACGGTGTTGTGCTTGATGGCCCTGGGGGCTCTGTGGCAACAGTAACAGAATATATGGTTAATGGGTCGCTCAGAAATGCTTTGTTGAAGAATGAAAGGAGTCTTGACAAGCGTAAGCGTCTCTTGATTGCTATGGATGCAGCTTTTGGAATGGAATACCTGCACAGAAAGAATATAGTGCACTTTGATTTGAAAAGTGATAATCTGCTGGTCAACCTTCGAGATCCTCATCGCCCAATATGCAAGGTTGGTGACTTGGGCCTATCGAAGGTGAAACGTCAGACATTGATATCAGGTGGTGTGCGGGGAACACTTCCATGGATGGCACCCGAGCTTTTGAATGGGAGCAGCAATATGGTGTCCGAGAAGGTTGATGTGTTCTCCTTTGGTATTGTCTTGTGGGAGCTCCTTACTGGAGAAGAGCCCTACGCAAATTTGCATTATGGGATTATCATAGGTGGCATAGTAAGCAACACGTTGCGACCTGAAGTTCCAGAATCTTGTGATCCAGAATGGAGGTCATTGATGGAGAGATGCTGGTCATCTGAGCCGTCAGAGAGGCCAAGCTTCACTGAAATTGCACATGAATTGCGGTCCATGGCTACTAAGGTTCCTCCGAAAATACCCAACCATCCACAGTAG | 4338 | 44.79 | MAFDQNAIPTGLRPLNVARPLVEDPHLTPVASTGRNPQRFTPQHPCDVASADTVPVPGKGNVSDKGFLELGYRNVVAGVTAWCPRMPPPFTHTATIPAVGFGYCSDLNVMGNRGGANAVELASSCMTVGINHSTNSSHRFGGGGLEFVSNNISMGSGDSANLCNKVTANGDQINSDSTSGFSSHLRNSVDGSAVDQVSEEGGDGSISKKKVKFMCSFGGKIFPRPSDGMLRYIGGQTRIISVRRDVTFSELVRKMVDTCGQAVVIKYQLPDEDLDALISVSCPDDLDNMMDEYEKLVERSSDGSAKLRMFLFSASELDSSGMVQFGDLHDSGQRYVETVNGMFDGVGGRITRKESFASATSTQNSDLSGTEAMDIANNDLGGVVSGPPSTTPSLPGGNLGTAVAIGPGLLKVDPVSAVFVDASAVPSSIPVLNSVPPEASSQPEAELGRSVPVTLMQQQPGIDFPPPVSQLQPTGDPRQAACVDFVQFRPQLGFSNSHHLGASGSMFIQQPNTLGITPTQFVPAVHMTMAPSSSHLSTMPNTYQSLVQYPRSQMDYFSNASTFGPRFVQLSAEQGYNSLQVPAPPVSVGVGFGLHQVPQSDQTVTSDELVSHHRAAFSEKIERLDGCYFCQKAVPHAHSNSPLQDQRENLTNPVSDSKFSYYSHHPEDHLTAHPMKNITETGALRQQTTDHGVGMQTRIFNPMDPEVEKPSVEAISFPRRIEGQHENDNTLKDQHNLDHGRISALQGDIRSPHVAVVEQICQSGEVDTLQHHYVAVEKQFRSNLVLDKHDVCVVGAPILASEYNTHENSNEYSNSHHGIIPNQNATHTGICYDHLRPIVGNLESSSICPSDICANLDHCKSPIEGTRKEDNFGSCSQPVSEREVLLDNNFVKPMVVLDPNNVKPTTFACSSSEVPYLMNERPVESSEVAQPPVRGSPGTLPQAENGMQHLESNEVCHSRNPHLFDMKTEHINNGVPVSAEWKEDTSLLETRMVSGDVESVSLPIRTGNMQDTANSLFSNQDPWNLQHDAHFLPPRPTKIQPRNEALASREPLTESPFRNIGEPNVETILDDGVCHPLVNSNKGSSEEQIRKDLQAVAEGVAASVLQSAQSSSSELHERIDPVCETITEGDVQNNDDGRTRHSEKPNLGFPMSEGFGRLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRVNDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALLKNERSLDKRKRLLIAMDAAFGMEYLHRKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKRQTLISGGVRGTLPWMAPELLNGSSNMVSEKVDVFSFGIVLWELLTGEEPYANLHYGIIIGGIVSNTLRPEVPESCDPEWRSLMERCWSSEPSERPSFTEIAHELRSMATKVPPKIPNHPQ | 1445 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 24375725 | 24383009 | + | CcPI632755_06g013880.1 | Cco06g1388 | 181988 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g1388 | 1445 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 1254 | 1445 | - | - | |
Cco06g1388 | 1445 | MobiDBLite | consensus disorder prediction | 1128 | 1149 | - | - | |
Cco06g1388 | 1445 | Pfam | Protein tyrosine and serine/threonine kinase | 1168 | 1429 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g1388 | 1445 | SMART | serkin_6 | 1166 | 1432 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1388 | 1445 | CDD | PB1_UP2 | 214 | 312 | - | - | |
Cco06g1388 | 1445 | Gene3D | Phosphorylase Kinase; domain 1 | 1159 | 1253 | - | - | |
Cco06g1388 | 1445 | SUPERFAMILY | CAD & PB1 domains | 226 | 318 | - | - | |
Cco06g1388 | 1445 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 230 | 314 | - | - | |
Cco06g1388 | 1445 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1291 | 1303 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g1388 | 1445 | SMART | PB1_new | 225 | 314 | IPR000270 | GO:0005515(InterPro) | |
Cco06g1388 | 1445 | Pfam | PB1 domain | 230 | 313 | IPR000270 | GO:0005515(InterPro) | |
Cco06g1388 | 1445 | SUPERFAMILY | Protein kinase-like (PK-like) | 1157 | 1427 | IPR011009 | - | |
Cco06g1388 | 1445 | Gene3D | - | 232 | 314 | - | - | |
Cco06g1388 | 1445 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 173 | 1432 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cco06g1388 | 1445 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1172 | 1203 | IPR017441 | GO:0005524(InterPro) | |
Cco06g1388 | 1445 | ProSiteProfiles | Protein kinase domain profile. | 1166 | 1430 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g1388 | 1445 | CDD | STKc_MAP3K-like | 1172 | 1429 | - | - | |
Cco06g1388 | 1445 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 1159 | 1253 | - | - | |
Cco06g1388 | 1445 | PRINTS | Tyrosine kinase catalytic domain signature | 1400 | 1422 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g1388 | 1445 | PRINTS | Tyrosine kinase catalytic domain signature | 1285 | 1303 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g1388 | 1445 | PRINTS | Tyrosine kinase catalytic domain signature | 1248 | 1261 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g1388 | 1445 | PRINTS | Tyrosine kinase catalytic domain signature | 1356 | 1378 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g1388 | 1445 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1254 | 1442 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1388 | Cco-Chr6:24375725 | Cco11g1297 | Cco-Chr11:25531318 | 6.20E-140 | dispersed | |
Cco06g1388 | Cco-Chr6:24375725 | Cco03g0422 | Cco-Chr3:4527491 | 1.30E-145 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86928 | PF07714 | PK_Tyr_Ser-Thr | 6.80E-60 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g1388 | - | - | - | 0.0 |